RNA id: XM_036951365.1


Basic Information

Item Value
RNA id XM_036951365.1
length 1891
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110512988
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12542264 ~ 12545786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGTGTCTTCATCTAGATGGGGACTTGTATAAAGTCCTCTCCCTGCTGCCCAGGTgactgatttgatttgacacagtgAGTTGTGAGACCTGTTagtaaaggagagagggacatTGTTGATGATGATGCTGGGTCTGGGCTCTGTTGGATTGGTTCTGTTATCTCTGGCTGTCCAGAGTGGACATGGAGCCCAGGACAGTGCTgtctggagtagagaggagaccACTGAGAGGAATTACTACACCAGGTACCACAACATGTCAGAgATTACAGCATGGATGGAGCAGATGAAGAGGGAGAACCCAGATGTTGTGTCCTCCATGGTCTACGGTCAAACCTATGAGAGGAGGAACATCACCTTACTGAAgATTGGTCTGAGTTCTACTGGGAGGAAGAAGGCTATCTGGATGGACTGTGGGATCCACGCCAGAGAATGGATCGCTCCTGCTTTCTGCCAGTACTTtgtcagagagATCCTGAGAACGTACAAAACCGACACCAAGGTGAATGAGATGATGAAAAATCTGGATTTCTACATCACACCAGTCCTAAACGTTGATGGCTACATCTACTCTTGGCATAATGAAAGCACTCGACTGTGGAGGAAGTccagatctccaggaacaggaggCTGTACCTGCTATGGAACAGACCTCAATCGTAACTTCTACGCTAACTGGGGCATGGTTGGTGTCTCGACAGACTGCTGCTTTGAGACCTACTGCGGCACCAAGGCTCTCTCTGAGTCTGAGGCCTGGGCCGTCACAGACATGTTGGGGAAAATGAGGGAAGACATTCTGGCTTTCCTCACCATCCACTCCTATGGCCAGCTAATCCTGGTGCCCTACGGACAtcccaacatctcagcacccaaCTACGATGAGCTGATGGAGGTGGGTCTGGGAGCAGCCAAGGCTATAAAGGCAGTCCATGGGATGGACTACACTGTAGGCACCTCACCTGATGTGTTGTATGCCAACTCGGGATCGTCTCGTGACTTTGCCAGGCTGATCGGCATCCCGTTGTCTTTCACCTTTGAGCTCAGGGACAAGGGCGAACACGGCTTCGAGCTCCCAGAAGACCAGATCCAGCCCACCTGTGAGGAGGCCTACGCCGGAGCACAACACATCATCACCTACACACACGACAAGGCCTTCTACAGCTATGCTGCCACCGTCAGGGCAACACTGTGGACCACACTGCTGGCAGCCTGGGTCTCTAGCGCCACCCTGCCGTAAACTGGGAGGACTGCAGGAGTCAGGCCAGGAGATGGTGGCAGTTTATCAGTATATTCAGAAATGAGACTTTGGACAAAAGTGATAAACTGTCAGATAGACTATAAAATCTGTTTAATCACTTATTTGATCAACTGTGCTTTGTTATTTGTTTCTCTACAATTCTGCTGTAAAATATAACGCTCGTTAAAAGTGACAAAACACAAACACGTTTGTACAGTAGAATATTTTGAATGAACATTTCCGTGATATAAATATACTCAACTGCTATGTAATGCTGTCGTAACGTCCTGCTTCTGTTATCGAGCCCCACGAGTTCAGTGAAGGTCCAGTTCAACATTAGATCAACCTCTGCTCCGGATGAAATATTGGACTGTTTAACTTGATCAGATCCAACAGCACCATTGTGTCCAGTTGCTTTCACCTCTGTCAGGTTTCTAGTTTttattgtcacgtgcacaagtacagtggaATGCCTTTCTTGTTTGCTCGTTCCCAACAATGCGgtaatcaatatcagtagtactATCATTTGTTTGTATAAAAaagtaaagtagaacaaaaacCCAGTGTTCCTGGGTAGCAGAAGGTTACGTTgaccccctctcccctgtccatGTGTAGCTGAGGAGCATTAAAGGCGCTGCTTGGTCAA

Function

GO: NA

KEGG:

id description
K23009 CPO; carboxypeptidase O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736899 lncRNA upstream 16714 12525247 ~ 12525550 (+) True G1517330
TU1736895 lncRNA upstream 32396 12509611 ~ 12509868 (+) True G1517326
TU1736892 lncRNA upstream 34896 12507103 ~ 12507368 (+) True G1517323
TU1736890 lncRNA upstream 72773 12469024 ~ 12469491 (+) True G1517321
TU1736883 lncRNA upstream 102857 12439194 ~ 12439407 (+) True G1517318
TU1736924 lncRNA downstream 172296 12718082 ~ 12718713 (+) True G1517353
TU1736957 lncRNA downstream 172989 12718775 ~ 12718999 (+) True G1517386
TU1736979 lncRNA downstream 218175 12763961 ~ 12765207 (+) True G1517408
TU1736980 lncRNA downstream 228426 12774212 ~ 12780369 (+) False G1517409
TU1736981 lncRNA downstream 228426 12774212 ~ 12785975 (+) False G1517409
XM_036951337.1 mRNA upstream 74365 12460009 ~ 12467899 (+) True LOC110527226
XM_036951367.1 mRNA upstream 88192 12448562 ~ 12454072 (+) True LOC118941034
XM_036951368.1 mRNA upstream 126786 12404859 ~ 12415478 (+) False LOC110513922
XM_036951369.1 mRNA upstream 133261 12404861 ~ 12409003 (+) False LOC110513922
XM_036951348.1 mRNA upstream 138231 12390243 ~ 12404033 (+) False LOC110527229
XM_021608381.2 mRNA downstream 3869 12549655 ~ 12552772 (+) True LOC110527217
XM_036951306.1 mRNA downstream 6787 12552573 ~ 12569425 (+) True LOC110527211
XM_036951364.1 mRNA downstream 26125 12571911 ~ 12600335 (+) False LOC110527213
XM_036951363.1 mRNA downstream 26160 12571946 ~ 12600335 (+) False LOC110527213
XM_036951359.1 mRNA downstream 26164 12571950 ~ 12600335 (+) False LOC110527213
TU1736637 other upstream 601159 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 898506 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 907285 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1449710 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1525175 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 287865 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 388868 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 391737 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 641315 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1888976 14434762 ~ 14436120 (+) True G1519096

Expression Profile