RNA id: XM_036951306.1


Basic Information

Item Value
RNA id XM_036951306.1
length 4725
RNA type mRNA
GC content 0.53
exon number 26
gene id LOC110527211
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12552573 ~ 12569425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCAGGAGTCAGATGAGACACACTTATTTTGTCAAGTGTGGCAACTTCACCAGGCACAGCTCCTCCTCCGCAACGAACGGAACGGAACGAGCCAGGTTGACACGTGAATATCACTTCCGGGGTCGCAACGTCTGCCGGCTTTCCTTTCCGCGGTCTCTCTTGGCTGAGCGTTTTCTGGATCTCACTGCAATGGCGGAGCAGCAGCAGTTCTACATCTTGCTGGGCAACCTGATGAGCCCTGACAACGACATCAGGAAACAGTCGGAGGAAGCTTATGACACCATCCCCGGTCAGACAAAGATCACATTTTTGCTGCAGGCCATCCGAGATGCAGCCTGCGCAGAAGAGGTCAAGACGATGGCGGCGGTGCTGCTGCGTCGGCTGCTGTCGTCCTCCTTCGAGGAGATCTACCCCGGCCTGACGGTGGACATGCAGACGGCCATCAAGACAGAGCTGGTCACCAGCATCCAGACAGAGGCCTCGCCCAACATTCGCAAGAAGGTCGCGGACATCGCTGCAGAGCTCTGCCGTAACCTCCTAGATGATGATGGAAACAACCAGTGGCCAGAGCTGCTCAAGTTCCTGTTTGACTCGGTCAACTCTGACAACGTTGGCCTGAGAGAGGCCGCCCTGCATATATTCTGGAACTTCCCAGGTATCTTTGGCAACCAgcagcagcactacatggaggtGATCAAGAGGATGCTGGTCCAGTGTATGCAGGACCAGGAGAACCCACAGATCCGTACCCTAGCTGCCCGTGCTGCAGCCTCCTTCGTCTTGTCCAACGAGGGCAACGCTGCCCTGCTGAAGCACTTCTCTGACCTGCTGCCAGGCATCTTGCAGGCGGTGAATGAGTCGTGTTACCAGGGAGATGACTCTGTGCTGAAGTCTCTGGTTGAGATCGCTGACACGGCCCCCAAGTACCTGCGACCCAACCTGGAGGCCACGCTGCAGCTCAGCCTGAAGCTGTGTGCTGACACCACCCTGACCAACATGCAGAGGCAGCTGGCCCTGGAGGTTATCGTCACGCTGTCCGAGACTGCCGCCGCTATGCTGAGGAAACACACCGCCATCGTGGCATCCAGCGTTCCCCAGATGCTGGCTATGATGGTGGAtctggaggaggacgaggagtgGTCTATGGCTGATGAGCTGGAGGACGATGACTTTGACAGCAATGCAGTTGCAGGAGAGAGCGCTCTGGACAGAATGGCCTGTGGGCTGGGAGGAAAGATGGTGCTGCCCATGATCAAACAGCACATCATGACTATGTTGCAGAACCCTGACTGGAAGTACCGCCACGCCGGCCTCATGGCGCTGTCGGCCATCGGGGAGGGCTGCCACCAACAGATGGAGGCCATCCTCAATGAGATCGTCAGCTTCCTGCTACTGTTCTGTCAGGACCCTCACCCCAGAGTCCGTTATGCTGCATGCAACGCCATCGGGCAGATGGCCACCGATTTCGCCCCCACCTTCCAAAAGAAATTCCACGATAAGGTGATCTCTGCCCTACTGCAGACCATGGAGGACCAGACCAACCCCCGTGTCCAGGCCCACGCTGCCGCGGCCCTCATCAACTTCACTGAGGACTGTCCCAAGTCCCTCCTGATTCCCTATCTGGACAGCCTGGTCCAGCACCTACATGTCATCATGGTGGCCAAACTACAGgagCTGATCCAGAAGGGTACCAAGCTGGTTCTGGAGCAGGTGGTGACGTCCATAGCGTCTGTGGCGGACACGGCCGAGGAGAAGTTTGTTCCCTACTACGACCTGTTCATGCCCTCCCTCAAACATATCGTGGAGAATGCTGTGCAGAAGGAGCTGAGGCTGCTCCGAGGGAAGACCATTGAGTGTATCAGCCTCATCGGCCTGGCTGTCGGCAAGGACAAGTTCATGCCTGATGCGTCAGCTGTGATGCAGCTGCTGCTGAAGACCCAGACCGACTTCAATGACCTGGAGGATGACGACCCACAGATCTCCTACATGATCTCAGCCTGGGCCAGGATGTGTAAGATCCTGGGGAAAGAGTTCCAGCAGTACCTACCTGTGGTCATGGGGCCCCTAATGAAGACTGCCTCTATCAAGCCAGAGGTGGCCCTCCTGGACACCCAGGACATGGAGAACATGTCGGAGGATGACGGATGGGAGTTTGTGAACCTGGGAGACCAGCAGAGCTTCGGCATCAAGACAGCCGGGTTGGAAGAGAAGGCCACCGCCTGCCAGATGCTGGTGTGCTATGCCAAAGAGTTGAAGGAAGGGTTTGTGGAGTACACAGAACAGGTGGTCAAGCTGATGGTTCCTCTGCTCAAGTTCTACTTCCACGATGGTGTGCGGGTGGCAGCAGCGGAGTCCATGCCCCTGCTGCTGGAGTGTGCGCGGGTACGAGGCCCAGACTACCTCACACAGATGTGGCACTTCATGTGCGACGCCCTCATCAAGGCCATTGGCACAGAGCCAGACTCGGATGTCCTATCAGAAATCATGCATTCGTTTGCCAAGTGTATTGAGTTAATGGGAGAGGGCTGCCTGAACAATGAGCACTTTGAAGAGCTGGGAGGGATCCTGAAGGGGAAGCTGGAGGAACACTTTAAGAACCAGGAGCTGAGACAGGCCAAACGACAGGATGAGGACTACGACGAGGGCATGGAGGAAACGTTACAAGACGAGGATGAAAACGATGTGTACATACTGACCAAAGTGTCAGACATTTTGCACTCTGTGTTCAGCAGCTACAAGGAACAAGTGCTGCCGTGGTTTGAGCAGCTTCTACAGCTCATCGTACAGCTCGTGTGTCCTAGCAGGCCGTGGGCAGACAGGCAGTGGGGTCTGTGCATCTTTGACGACGTGGTTGAGCACTGCAGCCCCTCTTCCTTTAAATACGCGGAACTCTTCCTGCGGGCCATGGCCCTGTCGCTGTGTGATACCAGCCCCGAAGTGAGACAAGCTGCAGCCTACGGCGTAGGAGTCATGGCTCAGTACGGAGGAGAGAACTACCGACCCTTCTGCACCGAGGCACTGCCCACGCTGTTGGGTGTGATCCAGTCTCCAGACTCCAAGGTCAAGGAGAACGTCAACGCCACAGAGAACTGCATATCAGCCGTGGGCAAGGTCATGAGATTCAGGCCTGAGTGTGCCAATGTCAACGAGATCCTTCCCCATTGGCTCTCCTGGCTGCCACTCAACGAAGACAAGGAGGAAGCTGTGCACACCTTTGACTTCCTTTGTGACCTTATCGAAAGCAACAATCCTATTGTCCTCGGACCAGACAATGCAAATCTTCCCAAGATATTCCAGATCATCGCTGAAGGGGTCGCCAACGAGTCGGTCAAGAGTGAGGATGCATGCAGCAAGAGATTGGCAAATGTCATCCGCCAAGTACAGggttctggaggactgtggaCCCAGTGTGTCACGATGCTGAACGAGACTCAACAGAaggccatccaggacctcctcAACACTGCTTGAGAAGCCTTATCCCCTTCCTTTGTTGGAAAACAACAAGACCATGTTTAAACATCTAGCTCCTGGATCTCCTCCTTCCTAGatcaccacctccctcccatCTCCTTTTCCATCTCTGATCTGTAGCGTGTGTGGACTTCACTGCAGCCTCCTGCTGCCCCCCTCCCTATCCAGTCAGTCTCCCCTGCACTCGACTAACTGTAGGGACCAGGTTGATTTGTCTGAGTGACTGTCAATAAGACCCTGCCCCCTCCAGAGGATGACCCCTCCCGTTTAAGTCACTAATGTGTTATCGCCCACTGGAGTGGTCTATACCCTCTTCTTCCTGAATCCTGACGGTTGGAGCGTTGTTGGCCTCACCTCCACAAAGGGAAAACAAATGAACACAAGTATTAATTCAGTTTCTTCTCCATCCTGTTACACTGTTCAGAATCATCTGGTCTTTTGATGAAATTGACTTAACCCTTTCCACCACAAGTTTAACTGGTGTAGTTGTGCTCTGTGGAACCATGTGAAAATGTCATGTTTACCCAGCTGTAATAAACTCCTAGAAGTATCAGACTTGGTAGGACCCAGCTGCTGTACGAGGAGTGTTGACTAGAGGACTGGGGAATGGAAGAGGGGAGTGTGTACATGTCATGGGGTGACCACTTCCTGCCTCtgaattttgtttttttgtttaggCTTTTTTTGTTTGTCTTTCTGACGGAGCCGCACGGTGGCACCTGGAGGAAACGGCCTCTGTATGCTGTTGGCTCACTGATCTGAATCTGTCTATTCTCAAGACTAACAGCATGTGTCAGTGGCTAACTCAAGCTCTCCTTTAATAAATGAGTGAGGAAATCATGATTGTCTGTCTAGGAGATTTAAAACAAACACTTTAGGTGTTATTTTCCTTTCCCTGAAACCCTGTATAAATGTAGGTTTGTTTTTCATGAAGGTTTACACCAATTGAATGAAGTTGGTTTAGGATTAAGTGTCTTAGCCACAATGTGCTGGGTTATAGACATGTAGACGCATGGAATAGACTTAATGTGTGCATCCATCCTCCGCTAACATTTGGTTTAGAACCTTAGCACCCCTGCAGATATTTGGTGGATGTCAACAATACATTTCAGATTGGCAGAATTTGTCATAATGCATTAATGTAATGCATGGGTTGTCACTTTCACTGCAATGTAGGTTTATTATACATTATTGAAATAAGGAAAGTTGATTTTACCCTGAACAAAAAATAAACCACATGCAACAGTT

Function

GO: NA

KEGG:

id description
K20222 IPO5, KPNB3, RANBP5; importin-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736899 lncRNA upstream 27023 12525247 ~ 12525550 (+) True G1517330
TU1736895 lncRNA upstream 42705 12509611 ~ 12509868 (+) True G1517326
TU1736892 lncRNA upstream 45205 12507103 ~ 12507368 (+) True G1517323
TU1736890 lncRNA upstream 83082 12469024 ~ 12469491 (+) True G1517321
TU1736883 lncRNA upstream 113166 12439194 ~ 12439407 (+) True G1517318
TU1736924 lncRNA downstream 148657 12718082 ~ 12718713 (+) True G1517353
TU1736957 lncRNA downstream 149350 12718775 ~ 12718999 (+) True G1517386
TU1736979 lncRNA downstream 194536 12763961 ~ 12765207 (+) True G1517408
TU1736980 lncRNA downstream 204787 12774212 ~ 12780369 (+) False G1517409
TU1736981 lncRNA downstream 204787 12774212 ~ 12785975 (+) False G1517409
XM_036951365.1 mRNA upstream 6787 12542264 ~ 12545786 (+) True LOC110512988
XM_036951337.1 mRNA upstream 84674 12460009 ~ 12467899 (+) True LOC110527226
XM_036951367.1 mRNA upstream 98501 12448562 ~ 12454072 (+) True LOC118941034
XM_036951368.1 mRNA upstream 137095 12404859 ~ 12415478 (+) False LOC110513922
XM_036951364.1 mRNA downstream 2486 12571911 ~ 12600335 (+) False LOC110527213
XM_036951363.1 mRNA downstream 2521 12571946 ~ 12600335 (+) False LOC110527213
XM_036951359.1 mRNA downstream 2525 12571950 ~ 12600335 (+) False LOC110527213
XM_036951361.1 mRNA downstream 2525 12571950 ~ 12600335 (+) False LOC110527213
XM_036951360.1 mRNA downstream 2526 12571951 ~ 12600335 (+) False LOC110527213
TU1736637 other upstream 611468 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 908815 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 917594 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1460019 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1535484 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 264226 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 365229 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 368098 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 617676 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1865337 14434762 ~ 14436120 (+) True G1519096

Expression Profile