RNA id: XM_036951364.1


Basic Information

Item Value
RNA id XM_036951364.1
length 1306
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110527213
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12571911 ~ 12600335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGACTAGAGCAAAAAAGTGCATGTTTAGAATGTCAAATAGCCTCACGCTGCTGTACACAGTTTGCACTGTAGAGAAATATATTTTATCTTCATGGTTTGCACACTGGTTGTAGTTTGCCGATCCTGAATGTATGTATCTAAAAAAACATTTGTCTGTTTATTCACTTCCTTCAGATCCATGATTGAATGCAAAGCACACGAGTTGAAATACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACAACTCAACAACACCACAAGATGTTTTACAGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAAATCACCAGATCATCGCTATTAAACCAGATCAAACCACAACTGCAGTACAGTCAACAGAAAAGAGTCCAATAGCTGCAGGATCCATGATTGAACACAAAGTGGCACACAATATGAAGTACTACACAGTTGAGACTGGCAATACTTTGGATTCTCATATTCAGTTTATGAGACGACTCAACAACACCACAAGATGTTTTACGGAAGTCGAGTCGCCAGTGGAGAGTGATGTCATCATGGCTTTCTGTCCCACCGTCTCCCGCGCCGGGACTGATATTGAAGCAGCACTGCAACAGATTCCAATGGGTAAAGATGTCATTCTGGTAGTGCTGCATCACACCTTCAACCCAGACTACACTGTACCTTACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGCCTGGGACTACTGGACTGTCCTCGCAATGATGCAGCAGTCAGAAATATTAGGCAGAAGTTTGACATAGATCCTGTGGCCAGAAATTGTGACTGTCTAGCTTGGATTCTAAACGCTGCCATGGTGTTACTGTCTTTATGCTGCAACTGCCCTTGTGTGGTGTTTTCTTACATGATGGGGCTCATCTCAGGCAAAAATCCATGTCCCTTTGCAAGACCTCATTCCAGAAATGAAGACTATTTACATTTGGCCCAACTATGAACATGTGATAATATATAGTGTGACTCCTGTAAACGTGATGATCAATTCCCTTAGAGAACAAATGTTATGGATTACATCTTTAATTGCACGTCATTTAGGCCTACTTGAGAAAGTACAGATCATTTACAGTGGTAATGTATGGAATTAGGCCTGGCTGTATCAATGTAACAATAATatggaaataaaaaaaaacaggattTGTGGAAGGGCACGAGTCTCAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736899 lncRNA upstream 46361 12525247 ~ 12525550 (+) True G1517330
TU1736895 lncRNA upstream 62043 12509611 ~ 12509868 (+) True G1517326
TU1736892 lncRNA upstream 64543 12507103 ~ 12507368 (+) True G1517323
TU1736890 lncRNA upstream 102420 12469024 ~ 12469491 (+) True G1517321
TU1736883 lncRNA upstream 132504 12439194 ~ 12439407 (+) True G1517318
TU1736924 lncRNA downstream 117747 12718082 ~ 12718713 (+) True G1517353
TU1736957 lncRNA downstream 118440 12718775 ~ 12718999 (+) True G1517386
TU1736979 lncRNA downstream 163626 12763961 ~ 12765207 (+) True G1517408
TU1736980 lncRNA downstream 173877 12774212 ~ 12780369 (+) False G1517409
TU1736981 lncRNA downstream 173877 12774212 ~ 12785975 (+) False G1517409
XM_036951306.1 mRNA upstream 2486 12552573 ~ 12569425 (+) True LOC110527211
XM_021608381.2 mRNA upstream 19139 12549655 ~ 12552772 (+) True LOC110527217
XM_036951365.1 mRNA upstream 26125 12542264 ~ 12545786 (+) True LOC110512988
XM_036951337.1 mRNA upstream 104012 12460009 ~ 12467899 (+) True LOC110527226
XM_036951367.1 mRNA upstream 117839 12448562 ~ 12454072 (+) True LOC118941034
XM_036951315.1 mRNA downstream 488 12600823 ~ 12610380 (+) False LOC110497019
XM_036951316.1 mRNA downstream 829 12601164 ~ 12610380 (+) True LOC110497019
XM_036951298.1 mRNA downstream 21990 12622325 ~ 12653756 (+) False LOC110497015
XM_036951299.1 mRNA downstream 21990 12622325 ~ 12653756 (+) True LOC110497015
XM_036951353.1 mRNA downstream 149588 12749923 ~ 12829550 (+) False LOC110527205
TU1736637 other upstream 630806 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 928153 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 936932 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1479357 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1554822 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 233316 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 334319 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 337188 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 586766 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1834427 14434762 ~ 14436120 (+) True G1519096

Expression Profile