RNA id: XM_036951356.1


Basic Information

Item Value
RNA id XM_036951356.1
length 1460
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110527205
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12749923 ~ 12829550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGCCattaggttagtacagtggttcccaaccaacCAGGGGTAGGTACTAGGGAGCCCTGGCTTATCTACAGGGgatacttgagaagactcatgagactaTAGGCTTTTACTGGTTCACATCCCTGGCTGCAATGGCGCACATAACAATCAACCAGTATCTCCAACAGGTGTATGAGGCCATTGATAATCATGAGGGGAGTTTTTGTGCAGAACTGCTGTCATTCAAACACCCACATGTGGCTAACCCACGTCTCCAGCTCGCCAGTCCAGAGGAGAAGTGCCAACAGGTGCTGGAAGTCCCGTACGATGAGATGGTTGCAGCACACTTGAGGTGCACCTATGCAGTGTCCAACCACGACTTTGTTGAGGCGTACAAATGTCAGACGTTGGTGGTCCAGTCATTCTTGAGGGCCTTCCAATCTCACAAAGAGGAGAACTGGGCCTTGCCAGTGATGTTCGCTGTTACGCTGGACCTGCGGATATTTGCCAACAATGCAGAGCAGCAGCTCCTGAGGAAGGGAAAAGGCAAACTGGGAGACATGCTGGAGAAAGCTGCTGAGCAACTGATGGGCTGTTTCAGAGTGTGTGCCAGCGACAATCGGGCTGGGATTGACGACTCCAAGAAGTGGGGAATGTTGTTTCTCATCAATCAGCTCTTCAAGATCTACTTCAAGATCAACAAGCTACACCTGTGTAAGCCACTGATCCGGGCCATCGACAGCTCCAACCTGAAGGATGATTACAGTATGGCCCAGAGAGTCACCTACAAATACTACGTAGGCCGCAAGGCCATGTTCGACAGCGACTACAAACCAGCCGAGGAGTACCTGTCCTTCTCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAACGCATGATCCTCATCTACCTACTGCCTGTCAAGATGTTGCTGGGTCACATGCCTAATCACCAGCTGCTCAGGAAGTACGACCTCATGCAGTTTGCCGACGTCACGAAAGCTGTGAGTGAGGGCAACCTGCTGCTGTTGAACGAGGCCTTGGCCAAGCACGAGACCTTCTTCATCCGCTGTGGCATCTTCCTCATCCTCGAGAAGCTCAAGATCATCACCTACCGGAACCTCTTCAAGAAAGTGTACCAGCTGCTGAAGACTCACCAGTTGCCCCTAGATGCCTTCCTGGTAGCTCTGAAAATGATGCAGGTGGAAGAGGTGGACATTGATGAGGTGCAGTGTATCCTGGCCAACCTAATCTGTGAGgGTCACATCAAGGGCTACATCTCTCACCAGCACCAGAAACTGGTCGTCAGCAAGGCCAATCCATTCCCCCTGCTGTCATCATCTTCCTAATCTACGTATCCCAGAATCCCCTTCACCCAGGAACTGCTCCCAGAAATATATTTCCTTATTATTTAGGTTGCATTTTATTTTGTCATATTTTTAACATTTTGAATaaaagtttttgttgttgttgta

Function

GO: NA

KEGG:

id description
K23801 PCID2, THP1; nuclear mRNA export protein PCID2/THP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736957 lncRNA upstream 31050 12718775 ~ 12718999 (+) True G1517386
TU1736924 lncRNA upstream 31336 12718082 ~ 12718713 (+) True G1517353
TU1736899 lncRNA upstream 224499 12525247 ~ 12525550 (+) True G1517330
TU1736895 lncRNA upstream 240181 12509611 ~ 12509868 (+) True G1517326
TU1736892 lncRNA upstream 242681 12507103 ~ 12507368 (+) True G1517323
TU1736991 lncRNA downstream 11833 12841383 ~ 12854300 (+) True G1517417
TU1736996 lncRNA downstream 26964 12856514 ~ 12877270 (+) True G1517422
TU1736994 lncRNA downstream 34980 12864530 ~ 12865350 (+) True G1517420
TU1736992 lncRNA downstream 51186 12880736 ~ 12881992 (+) True G1517418
TU1736990 lncRNA downstream 69260 12898810 ~ 12902980 (+) True G1517416
XM_036951298.1 mRNA upstream 96293 12622325 ~ 12653756 (+) False LOC110497015
XM_036951299.1 mRNA upstream 96293 12622325 ~ 12653756 (+) True LOC110497015
XM_036951315.1 mRNA upstream 139669 12600823 ~ 12610380 (+) False LOC110497019
XM_036951316.1 mRNA upstream 139669 12601164 ~ 12610380 (+) True LOC110497019
XM_021608373.2 mRNA upstream 163898 12571956 ~ 12586151 (+) True LOC110527213
XM_036951326.1 mRNA downstream 44927 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA downstream 44933 12874483 ~ 12879111 (+) True LOC110495518
XM_021570809.2 mRNA downstream 52961 12882511 ~ 12885631 (+) True LOC110495515
NM_001165113.2 mRNA downstream 56545 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 245514 13075064 ~ 13080819 (+) True gp91phox
TU1736637 other upstream 808944 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1106291 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1115070 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1657495 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1732960 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 4101 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 105104 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 107973 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 357551 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1605212 14434762 ~ 14436120 (+) True G1519096

Expression Profile