RNA id: XM_036951326.1


Basic Information

Item Value
RNA id XM_036951326.1
length 2305
RNA type mRNA
GC content 0.55
exon number 10
gene id LOC110495518
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12874477 ~ 12879111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAGTGAAGTGCATTATGGGTATTCGAATTTCATCAATGGAAGTAGACAAAGTAACATTTATCGATACTATCAGGTTTAAATAGATAAGGCACAGGTATCAGAGGAAATCATAACCAGCTGACCATCCATCAATATTGAAAATGGATGGGTCAGAGAAAACAGAAGTTGCGAGGGCAAAGTCATTCTGGGTACAGGTGGATGTGGAAGAAACATTTGATGAGCTATATGAATATCTGACACACCTGAAGCATGCCATCAAGACCTGCACTGCTACAGACAGAGaATATGTCCAGGGGATGAATATGATTACCTTATTGGATTCCGGGCTGATTGTGACACCGGCAACTACAGGCCCAGCTACAACTACAGCCCCAGCTACAACTACAGCCCCTGCCACTGGGAATGAGTCTTTTGTGGAGGTGGTTATTGGTGCAGAAATCCTCACAGTTTCAGTCCCTGACATTGACGACCCTCAGACTCCACTGCCCCCCCAACAGACAGAGCCCGtatcccctccctcacccctccgtTACGATGGCTCCATCATCCCCCTGTCGCCCCCCTACCCCAACAGAGAGGACCTCATGACTCCCCTGCTGCCCCCCTACCAGTTCCATACCTGCAGCCAGGCCTGTGTGCCCCACCTGCCCCCGTCCGCACACCACTTCCGGGGCCACAACCCTCTCAGGATCCCACTACTCTGCTCCTTCCAGCGGCAGTGTGCTCCCACCCCACCTCTCACTACTGGGATTGAGACCGATTGTGATGGGACTGAACCAGACTCTAAGGGGGAGGGCTCTGAGAATTCTGAGGGTGCAGAGTTGGACTCTGAGGTCACGGCACGGGGTGTTGTTTACAAGGCTCCCTGTGGGCTGAGTCTCTGCACCCCAGGGGAGGTGCTATGTTTTCTGGTTGCCACAGAGAGTCACGGCATTCTGCAGGTGGACGACTTCACCTTTGACCCCCTGGTGCAGTTGGAGTGTCTGCGGCCACCGCAGTGGCGCCCACCCGGGCTGGCTGAGAGGGACCTGAGCCGGGGGTCAGAGCCAACGCCAGTGGAGTTATGCCTGCAGGAGGAAGGAGTGCGGCCGGAGGATTTCCGCTACAGGAAGGAGCGTTGGCCTCACGGCTGTTTCCTCAGTTCGGGCCCGCTGTTCACCACCTGCTGCGACTGCACTGACGGCTGTGGTGATGCGGAGAGCTGCGCCTGCGCTTGTCTGACCCCAGGCGGCAAACACTACTCCCACCAGAGGCTGTCTGAGCATGTGCCCAAAGGGCTGTACGAATGCGGTCCTTGGTGTGGGTGTGACCGTGGTATGTGCCAGAACCGTGTGGTTCAGCGGGGTCTGCGTGTCCGGTTGCAGGTCTTCCCCACCGGAAACAAAGGATGGGGGGTGCGTTGCCGTGACGACCTGGACAGGGGCACGTTCGTGTGCACATACGCAGGTGTAGTTCTCAGGGCAGGACTGGACTCCGACGAGCCCCTCCCACCCAAGCGCCAGAAGGCGGACCTTCCCTCCGACGACGAGGTGGAGGTGGTAGATGAGTGGCTGGCACCGGCAGGGGAGGGACGAGCGCCTGCAGAGACCCTGGAGCCCTCGCCCCCCTCCTCACCTCCTGACGGGCTTCATGTGCCCGTTATCCAGAGGCCCGGGGTGGAGCTTTCTCCACAGATCCAAGCTGTGTTGGTGGGAAACTCCCTGCCAGTTCAACCTCTCACAGGCATGGAGGTTGAGGAGGGTGTGGAGCAAGAGAATGGGGTACAGAAGCCTCAGCTGAATTCCCAAGCACACATGAAAGAAGTGGATGTGAAGCTGTCTGTGTCCACAAGCACAAGCCCCAAAAAACTGGGCCCAAAGCAGAACCCTATGGAGCACCTGTATTACCTAGATGCCACGAAGGAGGGGAACGTGGGAAGGTTCATAAATCACAGCTGCGACCCCAACCTATTTGTTCAGAACGTCTTCACTGACTCTCATGATCCAAACTTCCCCGTCATCGCCTTCTTCACCAGCAAAGTGGTGAAGGCGGGGACTGAGTTGACCTGGAACTACTCCCACAGCCCTGACAGTGACCTGGAACAGAAAGTGACATGTCAGTGTGGCTGTGAAGGCTGTCAGGGACTGCTGGCCTGAACCTTGAGATGAACACAGAAACAAAATACTCCTTTATAGCCTGCTTCTACACCCATTACATAGTCAGTTTGTGCTGTAAACAAATCTGCCTTCAGACCAGGCCACAATGACCCCAAGATGTGTATGATGGTAAAAAaaaagcaaaaaaagaaatgtcctttcactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736994 lncRNA upstream 9127 12864530 ~ 12865350 (+) True G1517420
TU1736991 lncRNA upstream 20177 12841383 ~ 12854300 (+) True G1517417
TU1736983 lncRNA upstream 68934 12789545 ~ 12805543 (+) False G1517410
TU1736984 lncRNA upstream 68934 12795312 ~ 12805543 (+) True G1517410
TU1736981 lncRNA upstream 88502 12774212 ~ 12785975 (+) False G1517409
TU1736992 lncRNA downstream 1625 12880736 ~ 12881992 (+) True G1517418
TU1736990 lncRNA downstream 19699 12898810 ~ 12902980 (+) True G1517416
TU1737029 lncRNA downstream 45288 12924399 ~ 12924636 (+) True G1517452
TU1737031 lncRNA downstream 49813 12928924 ~ 12929968 (+) True G1517454
TU1737037 lncRNA downstream 68260 12947371 ~ 12956518 (+) True G1517458
XM_036951353.1 mRNA upstream 44927 12749923 ~ 12829550 (+) False LOC110527205
XM_036951354.1 mRNA upstream 44927 12749962 ~ 12829550 (+) False LOC110527205
XM_036951355.1 mRNA upstream 44927 12749997 ~ 12829550 (+) False LOC110527205
XM_036951356.1 mRNA upstream 44927 12750049 ~ 12829550 (+) True LOC110527205
XM_036951298.1 mRNA upstream 220721 12622325 ~ 12653756 (+) False LOC110497015
XM_021570809.2 mRNA downstream 3400 12882511 ~ 12885631 (+) True LOC110495515
NM_001165113.2 mRNA downstream 6984 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 195953 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 223518 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 254006 13133117 ~ 13134843 (+) True LOC118941099
TU1736988 other upstream 2314 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 933372 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1230719 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1239498 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1781923 11086085 ~ 11092554 (+) True LOC118941092
TU1737033 other downstream 55543 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 58412 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 307990 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1555651 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1619675 14498786 ~ 14499137 (+) True G1519538

Expression Profile