RNA id: XM_021570809.2


Basic Information

Item Value
RNA id XM_021570809.2
length 1848
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110495515
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12882511 ~ 12885631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTGATCACGTGACCGCAGCGTACAAAACACTCCTCGTTCCTTTCTTTCTACTTGTGTTTACGACGTTCTTATACCTCAGTGGTTTATGGAGGAGATGGAAGTCAACATGAACACATTGCTGGCAGCAGGGCTTCTACTGCTTTTCGCTATGCCCGGAGAACTTTACAGAATCCCTCCGCACGAGGAAGTCGCCAGGATGGCTAGATTCGTCGCCAACCAGTGCAACTGGGCTTCCATGGCCACAATATCGACCCATGAGCCAGTGCAAGGACAACCCTTCTCCAATGCGTTCTCTACCAGTGACGGACCAGTTGGGTCTGGGACTGGGGTGCCCTACATGTACCTCACCACTATGGAGATCTCTGTCCAGGATTTAAAGGTGAACCCCCAGGCTTCCTTGTCCATGTCCCTGGCCCAGACAGACTTCTGTAAGAACCAAGGATACGACCCTCAGGATCCCCTTTGTGCCCACATCATCTTCTCTGGCTCTGTGCTGGAGATTAACGGTACAGAGGCCACCTTTGCCAAGAAAGCCCTGTTCAGTCGCCACCCTGAGATGGTCGACTGGCCCACCGACCACAACTGGTTCTTTGCCAAGATGAACATCACCAAGGTGTGGGTTCTGGACTACTTTGGAGGGGTAAAGACAGTCACACCAGAAGACTACTTCAAGGCTACACCCTACAAGAGACACCACTGAGAGGACACCACAGCCAGTTTGATGAGGAGGAATCCTAAGTGTTTCATAGTGAGCTAGAGGGCAGGGGAGGATGGACCCAATATTTGGAATAATGAagactttttttaaattttcttcCCCCAACTAAATTTGCTCAATAATGGCCATTTGCTGAATTCCAAATAATGTAATATCTACTGAGGTGTCTGTGGGGGAAGGGGATGGTTTGGAATTCAGCGTTTCTCTCATATGCTTCCAATTGAAATGTATGGCTATAGGGATGGATCTCTGTGTGTAATTGTGGGTTATACCCTTTAGGAAGCTCTATTGTTGTGCAATATAATTATTTTAAGAAGGACTGCCTTCGTTGTTAGGGAGTTCATTTGGCTTTTGTAGTTATAAGAAAGAATTGATGGCATCTCTCCCATGTGAGCAGTCATATGCAGTGTTGTATTTTTACCACAAGAGGGGGAGGTGTGATGCTTGGTACAGACAGAAGCTGGCTTGAAGGGTAGTTTGACCAAATTACATATGTTGTAGTAGTATGGAGGTGATTTTTGTTTGTAATGCCATTTGGGGTATGCCAACAAGGGTACTACCACTCTATTGTTTTTGGACAATGCCACCAATAAGCTGTAGCAAGGTAAACAAACCCACATTCTGGGTGGCAGACGCTAGCTCCATAGAATACCTTTTTAATGTAGGTATCCATCAAATTAGAATAagttgtaatttgggtgaaccaTTTCTTTAAAGCAGAGGAAAAACATGACGCTCTTGTTGAATTAAATTGTGTGttatagttagttagttagttagttagtggtaTGTGTTGATTATGAAGCATTGCACTTGTCATCTACAAATCCATTTCTCATTTTACAAGTAAACCTTTTTTAGTCTTCATTTAATCAGTTTGGGTCtaattcatttcaattcaataTCATGCCAAAATATAACTAAATGTGACATGcatttaaaacaaaatatattcaGTTTTACAACATCACTTCTGATTTTTGCTGGAATTTAAATACATTCTTTGTATATTTTCTACGTGAAATAAGTATTTATATGCTCCTCTATTCTCTATTGATGCTGACACGGTACATATTTTTGTAAACAAAATGATGGATGATTTGTCTAAATAAAGCTATATTTTGTAT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736992 lncRNA upstream 519 12880736 ~ 12881992 (+) True G1517418
TU1736996 lncRNA upstream 5241 12856514 ~ 12877270 (+) True G1517422
TU1736994 lncRNA upstream 17161 12864530 ~ 12865350 (+) True G1517420
TU1736991 lncRNA upstream 28211 12841383 ~ 12854300 (+) True G1517417
TU1736983 lncRNA upstream 76968 12789545 ~ 12805543 (+) False G1517410
TU1736990 lncRNA downstream 13179 12898810 ~ 12902980 (+) True G1517416
TU1737029 lncRNA downstream 38768 12924399 ~ 12924636 (+) True G1517452
TU1737031 lncRNA downstream 43293 12928924 ~ 12929968 (+) True G1517454
TU1737037 lncRNA downstream 61740 12947371 ~ 12956518 (+) True G1517458
TU1737039 lncRNA downstream 62676 12948307 ~ 12948739 (+) True G1517459
XM_036951326.1 mRNA upstream 3400 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 3400 12874483 ~ 12879111 (+) True LOC110495518
XM_036951353.1 mRNA upstream 52961 12749923 ~ 12829550 (+) False LOC110527205
XM_036951354.1 mRNA upstream 52961 12749962 ~ 12829550 (+) False LOC110527205
XM_036951355.1 mRNA upstream 52961 12749997 ~ 12829550 (+) False LOC110527205
NM_001165113.2 mRNA downstream 464 12886095 ~ 12898735 (+) True cd3z
NM_001171859.1 mRNA downstream 189433 13075064 ~ 13080819 (+) True gp91phox
XM_021570802.2 mRNA downstream 216998 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 247486 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 504398 13390029 ~ 13392754 (+) True LOC118941100
TU1736988 other upstream 10348 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 941406 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1238753 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 1247532 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1789957 11086085 ~ 11092554 (+) True LOC118941092
TU1737033 other downstream 49023 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 51892 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 301470 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1549131 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1613155 14498786 ~ 14499137 (+) True G1519538

Expression Profile