RNA id: NM_001171859.1


Basic Information

Item Value
RNA id NM_001171859.1
length 1698
RNA type mRNA
GC content 0.54
exon number 13
gene id gp91phox
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13075064 ~ 13080819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGCAACTTTGCTGCCAACGAGGGACTTTCGGTCTTTGTCATTCTGGTATGGCTGGGAATCAACGCTTACCTGTTTGTCCAGTTCTAcatgaacttcctgactgagagATGGTTCTACACACGGGTCCTTCTTGGGGATGCCCTCTCCTGGGCCAGGGCTCCTGCAGCCTGTCTCAACTTTAACTGTATGCTTATTCTGCTGCCAGTCTGCCGGAACCTTCTGTCCTTCCTGCGCGGCTCCATTCAGTGTTGCAGTCGCACAGCTGCTCGACAACTGGACAGAAACATCACCTTTCACAAGCTGGTAGCTTACATGATAGCATTTCACACAGCGGTCCACATCATCGCCCACCTGTTTAACTTTGAGTGGTTCATGGGAGCCCAGCTGTACAGGAACAGCAGCTCTCTGCCCTTTGTGCTGTCCCAGATTGGCACCGGAGACAATGCCTCCTACCTAAACCCCATCAGGACTGACCAGACCAACCCAACCATAGTGATGTTCACTACCATCGCGGGGTTAACGGGCGTGGTCATCACCTTGGCCCTCATCCTCATCATTACATCATCCATGGAGGTCATCCGCAGGTCATACTTCGAGGTTTTCTGGTACACCCATCACCTCTTCATCATCTTCTTCATCGGACTCGTCTTCCACGGCTTTGGGCGAATTGTCCGAGGGCAGACCGCTACAAGTCTCCTGGAGAACAAGCCATCGCAGTGTGCAGATCAGTTTGAGTCATGGGGAAAGAACGGGACCTTCTGCCCTAAGCCAGAGTTTGCTGGGAACCCTCCTATGACATGGAAGTGGGTGGTGGGGCCTATGAtcttgtatgtgtgtgagagactggTCCGATTCTACCGCTCCCAACAGAAGGTGGTCATCACCAAGgtGGTGATGCACCCGTCCAAGACCCTGGAGCTCCAGATGAAGAGGAAGGGTTTCAGGATGGAGGTCGGCCAGTACGTCTTCATGCAGTGTCCCTGCGTCTCCCAGCTGGAGTGGCATCCCTTCACCCTCACCTCCGCCCCCGAGGAGGATCACTTCAGCGTCCACATCCGTATCGTGGGCGACTGGACCCAGGGCCTGTACGAGGCCTGCGGGGGGGACAAGAACGAGACCCAGGAGGCATGGAAACTGCCCAAAATGGCGATAGATGGCCCGTTTGGTACGGCCAGTGAGGACGTGTTTGGCTATGAGGTGGTCATGCTGGTGGGTGCTGGCATCGGGGTCACCCCCTTCGCCTCCGTCCTCAAGTCAGTGTGGTACAAACACATCCAGGAGAACCAGAACGTTTTCACCAAGAAGATCTACTTCTATTGGCTGTGTCCTGAGACCCAGGCGTTTGAGTGGTTTGCTGACCTGCTGCAGTCTCTGGAGGGACAGATGACAGAGAAAGGCATGGTGGACTTCCTCAGCTACAACATCTACCTGACCCGCTGGAAAGAGACCGAGgctGCTCACTTCAGAGTTCACCATGAGGCAGAGAATGACCCTATCACAGGGCTGAAGCAGAAGACTCTGTATGGGAAACCTAACTGGGACAATGAGTTTACTACTATTGGGACAAAGCATCCAGAgaaaAAAGTAGGAGTGTTCCTGTGCGGTCCCACCCAGCTGGCTGACGTCTTGGAGAAGCAGTGCCTGTCTCACTCTGAGGCTGGTGTCAAGTTCATCTTCAACAAGGAAAACTTCTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K21421 NOX2, GP91, CYBB; NADPH oxidase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737093 lncRNA upstream 14404 13060368 ~ 13060660 (+) True G1517511
TU1737088 lncRNA upstream 22986 13051227 ~ 13052078 (+) True G1517506
TU1737083 lncRNA upstream 27683 13043700 ~ 13047381 (+) True G1517501
TU1737071 lncRNA upstream 50500 13023050 ~ 13024564 (+) False G1517489
TU1737069 lncRNA upstream 50500 13023774 ~ 13024564 (+) True G1517489
TU1737106 lncRNA downstream 9650 13090469 ~ 13091536 (+) True G1517519
TU1737116 lncRNA downstream 56126 13136945 ~ 13137243 (+) True G1517528
TU1737124 lncRNA downstream 76914 13157733 ~ 13158166 (+) True G1517536
TU1737127 lncRNA downstream 84835 13165654 ~ 13165876 (+) True G1517539
TU1737128 lncRNA downstream 85418 13166237 ~ 13166465 (+) True G1517540
NM_001165113.2 mRNA upstream 176329 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 189433 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 195953 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 195953 12874483 ~ 12879111 (+) True LOC110495518
XM_036951355.1 mRNA upstream 245514 12749997 ~ 12829550 (+) False LOC110527205
XM_021570802.2 mRNA downstream 21810 13102629 ~ 13132209 (+) True LOC110495507
XM_036951879.1 mRNA downstream 52298 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 309210 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 369338 13450157 ~ 13451678 (+) False LOC118941043
XM_021570794.2 mRNA downstream 394255 13475074 ~ 13503268 (+) False LOC110495498
TU1737034 other upstream 132570 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 138786 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 202901 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1133959 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1431306 11642789 ~ 11643758 (+) True G1517019
TU1737133 other downstream 106282 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1353943 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1417967 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1475507 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1733163 14813982 ~ 14814886 (+) True G1519733

Expression Profile