RNA id: XM_021570802.2


Basic Information

Item Value
RNA id XM_021570802.2
length 2744
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110495507
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13102629 ~ 13132209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGCATGGAGAGGTCCGAGGCCTGTAGAACCACCTGCAGCTCATTCATTTACGGCCAGTGAGGAGAGAGCGACTGCGCTGTGAAAGACTGCGGGTGGATCAACTGAACCAACAAAGCCCAGTGGAGAATCACAGCAACGCAGCCCCGCTGAAAACCCAGCACCCCATTTTACAGTAGAATGGCATCAAGAAGAATGGAGACCAAACCAGTGATAACCTGCCTCAAAACGCTCCTCGTCGTCTATTCCTTCGTGTTTTGGaTCACGGGGGCGATCCTCTTGGCTGTGGGACTATGGGGAAAGTTTATGCTGGGTGCGTACATATCTATCATCGCTGACAGCTCCACCAACGCTCCTTATGTTCTCATCGGCACCGGAACATGCATCATCGTGTTCGGACTGTTTGGATGCTTCGCTACCTGCCGCGGGAGCCCATGGATGCTCAAGCTGTATGCCATGTTCCTGTCCCTGATCTTCCTGGCTGAGCTTGTGGCTGGCATCTCCGGCTTTGTCTTTCGTCATGAGATAAAGGGAACCTTCCAGAGGACCTTCAGTGAGGCAGTGAAGAACTACAATTCCCAGGACGAGAGGAGCCTGGCTGTGGACAATGTGCAGCGCAGTttgAAATGCTGTGGTGTGTTGAACTACACCAGCTGGTTGTCCAGTATCTGGTTCCCTAACAACGGCATCCCACCCAGCTGCTGTGCCAGCATCTCTGACTGTAACGCTTCTGACCTGCACAATGTCACCATAGCCCCCAGCAAGGTCCACCagcagGGCTGTTATGAGCTAGTGACTGACTTCATTGAGACTAACATGGGGATCATTGCTGGAGTGACATTTGGAATAGCGGTCTCACAAtcaATTGGTATGCTGTTGGCATGCTGTCTGTCGCGGCTTATCACTGCCAACCAATATGAGATGGTGTAGCAGTGAGGTGCAGGGAGACCAGGAGGAGGAGAGCGTACACGTCACCTTGGAACCTGGGGAGGAACACACCCAAACGCTGGCACAGTCCATTCTTACTTTTCCACACCTTATCTTTCTTACTTtatcgctctctttttctctctttcatctctttgAACACATTCCTTAATATGACACCATGCCATGATTAAAAATGTTACCTTTCAAGACCTTTATTCTTCTAAAATGAATGGTTGTCGATTAGCACCTGCCTCAGCCATATGCTCTGATCCAGGCATGCCATGCCTAATTCAAACACTACCAATCTTCACTTACACAAGTTGACAATATTCCTAAGAAATTACCTTGATGCAACATAGCAGTGGAACGAGGAGCTATCTTCCCCAGTCTAAATTTCCTGGAAATAATTTTTGGGATGCCATCAGAATTTCCAATATGAGGTCTTTGAAAGAAACTTGAGCTCACTCAGAAGtgactgagtctctctctctctctctctcacacacacacacgcacacacacagtgtctgcTTTTTGCTGCTACATGGACTACAGTAAACCTACATCCTGCTTCTAATGACTATCACTCTAAATGACCTTGTGCAAGTTGCTCTCTGTGGATGTGTATTTGTGATGCGTTTAGATCCTCTGTATTCAGTCCTGTACTTGGTGATCTCTGCCACTCCCTCCCCTGTGCCTTCTGTCTGTCAGTTGGTTAGTCataatgttgttttgttgttgtaatatttcatttcattttaaaAGTCTTAACTAGTCATGTGTGTTTCTATAACAGTAGTCTGAGACACAGCCATTTTTCTGGTTTAAACCCCAGTTTTGGTGTTCAAATGTTTTtacacattcaccttctgcttgAGATCCCACTCTATCTGACTATCCTTGTCCATTCTCCAGCACAtccagttctctctctgtctctctccaccgcCACACCCCAGTACATTCGGTTCCAACACCCTCCTCCCTGACTGACGCATATCGCTGCACAAACTAGAGTTTCACTGAGTCAGCACTGCTTTCTGATGATGAGAGAAGACTATTCTACTTCCTGTCTTTTGTTGTTGCCGTTTGCTTCTCACTATATGGGattggtagacagagagagagccaacTGGGCAcagactggttgaatcaatgttgtttccacgtcatttgtGGAATAGACAGTGAATTAATGTCTGTCcagtgatagaaagagagagagattcattcTCAGTGGCAGGACTTGAGGTGTTCGAGCTCGATTCGGTCTGTCATTGCTCTGGCTTGGAACAATCAAATGAAATACCACTTTTTGAAGATTTGCCACTTTTGTGTATTACTTAAATGGAGAATCAGTAATATGACAGCAACCTCTTAGGTGGGAATGACTGTAGGAATGACTGTAAGAATACTACGCTTTAGCGAGGGCCTGGGGGTAGAATGGAATGGGGCAGACCACCGAGGTCACTGACACTGTTACTGGTTCCATTCAACTGTCATGTGAGCACAGAAAGCTGGTTCCAAGATTCTATTTCTCTAATTACTAGGATTCTTTtaggtttttgttgttgtttgttttgggGTTTTGAGCATTCTGAAGTAGCTCTGTGTTTTCGGGGATCACTATACAACCAATGTACATGATCAATTTATCTCTCAATCCAAAATTGGACAGATGAAATAAGACtgtataaaaaaagaaagaaaacgtTTTAAAATGCATCACCAGCTAGCATGCCAACAAAtgtatgttgatattgtgaaCAATTGTGATCTTGAATATCTGAATAAAATGGTCATTACATCGTTTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06571 TSPAN7, TM4SF2, MXS1, CD231; tetraspanin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737106 lncRNA upstream 11093 13090469 ~ 13091536 (+) True G1517519
TU1737093 lncRNA upstream 41969 13060368 ~ 13060660 (+) True G1517511
TU1737088 lncRNA upstream 50551 13051227 ~ 13052078 (+) True G1517506
TU1737083 lncRNA upstream 55248 13043700 ~ 13047381 (+) True G1517501
TU1737071 lncRNA upstream 78065 13023050 ~ 13024564 (+) False G1517489
TU1737116 lncRNA downstream 4736 13136945 ~ 13137243 (+) True G1517528
TU1737124 lncRNA downstream 25524 13157733 ~ 13158166 (+) True G1517536
TU1737127 lncRNA downstream 33445 13165654 ~ 13165876 (+) True G1517539
TU1737128 lncRNA downstream 34028 13166237 ~ 13166465 (+) True G1517540
TU1737131 lncRNA downstream 44907 13177116 ~ 13182157 (+) True G1517543
NM_001171859.1 mRNA upstream 21810 13075064 ~ 13080819 (+) True gp91phox
NM_001165113.2 mRNA upstream 203894 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 216998 12882511 ~ 12885631 (+) True LOC110495515
XM_036951326.1 mRNA upstream 223518 12874477 ~ 12879111 (+) False LOC110495518
XM_036951325.1 mRNA upstream 223518 12874483 ~ 12879111 (+) True LOC110495518
XM_036951879.1 mRNA downstream 908 13133117 ~ 13134843 (+) True LOC118941099
LOC118941100 mRNA downstream 257820 13390029 ~ 13392754 (+) True LOC118941100
XR_005037325.1 mRNA downstream 317948 13450157 ~ 13451678 (+) False LOC118941043
XM_021570794.2 mRNA downstream 342865 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA downstream 342869 13475078 ~ 13503268 (+) False LOC110495498
TU1737034 other upstream 160135 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 166351 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 230466 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1161524 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 1458871 11642789 ~ 11643758 (+) True G1517019
TU1737133 other downstream 54892 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 1302553 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1366577 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1424117 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1681773 14813982 ~ 14814886 (+) True G1519733

Expression Profile