RNA id: LOC118941100


Basic Information

Item Value
RNA id LOC118941100
length 1323
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC118941100
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13390029 ~ 13392754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaccgggagagaggaggaaaccgagagagaggaggaaaccgagagagaggaagaaaccgagagagaggaggaaacccagagagaggaggaaaccgagaaggaagaaaccgagagagaggcagaaaccgggagagaggaggaaaccgggagagaggaggaaaccaagagagaggaagaaaccgagaaagaggaggaaaccgagagagaggaagaaaccgggagagaggaggaaaccgagagagaggaagaaaccgggagagaggaagaaacagagtgagaggaggaaaccgagagagaggaggcaaccgagagagaggaagaaaccgagagagagggggaaaccgagacagaggaagaaactgagagagaggaggaaaccgggagagaggaagaaaccgagagagaggaagaaaccgagagagagggggaaaccgaGACAGAGGAGGAAACTGAGCGAGAGGAAGAAACcggaagtgagggagaggaggaaaccgggagagaggaagaaaccgagagagaggaagaaaccgagagagagggggaaaccgagacagaggaagaaactgagagagaggaggaaaccggGAGAGAGGAAGTAACAGAGAGGAGGAagccgagagagaggaagaaactgagagaggaggaaactgagaaagaggaagaaaccgagagagaggaagaaaccgggagagaggaggaaactgagaaagaggaagaaaccggaagagaggaggaaaccgagagagaggaagaaaccgagagagaggaggaaaccgagagagaggaagaaacagaggaggaaaccgagagagaggaagaaaccgagagagaggaggaaaccgagaaggagaaaaccgagagagaggacgaagaaaccgagagagaggaggaaaccgagagagaggaggaaaccgagagagaggaagaaaccgagagagaggaggaaaccgagagagaggaggaaaccgagagagaggaggaaaccgagagagaggaagaaacagagagaggaggaaaccaagagagaggaagaaaccgagagagaggaagaaacagagagaggaggaaaccgagagaggaagaaaacagaagagaggaggaaaccgagagagaggaagaaaccgagagagaggaggaaacagagagagaggaagaaaccgagagagaggaggaaaccgagagagaggaggaaaccgagagagaggaggaaaccgagagagaggaagaaaccgagagagaggaggaaacccagagagaggaggaaaccgagagggaagaaaccgagagagaggaagaaacagagagagaggaggaaacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738100 lncRNA upstream 87218 13302593 ~ 13302811 (+) True G1518292
TU1737139 lncRNA upstream 171368 13218447 ~ 13218661 (+) True G1517551
TU1737132 lncRNA upstream 203950 13185844 ~ 13186079 (+) True G1517544
TU1737131 lncRNA upstream 207872 13177116 ~ 13182157 (+) True G1517543
TU1737128 lncRNA upstream 223564 13166237 ~ 13166465 (+) True G1517540
TU1738190 lncRNA downstream 47806 13440560 ~ 13440830 (+) True G1518359
TU1738196 lncRNA downstream 57548 13450302 ~ 13451677 (+) True LOC118941043
TU1738208 lncRNA downstream 74526 13467280 ~ 13519064 (+) True G1518374
TU1738262 lncRNA downstream 167069 13559823 ~ 13560040 (+) True G1518414
TU1738264 lncRNA downstream 168843 13561597 ~ 13561803 (+) True G1518416
XM_036951879.1 mRNA upstream 255186 13133117 ~ 13134843 (+) True LOC118941099
XM_021570802.2 mRNA upstream 257820 13102629 ~ 13132209 (+) True LOC110495507
NM_001171859.1 mRNA upstream 309210 13075064 ~ 13080819 (+) True gp91phox
NM_001165113.2 mRNA upstream 491294 12886095 ~ 12898735 (+) True cd3z
XM_021570809.2 mRNA upstream 504398 12882511 ~ 12885631 (+) True LOC110495515
XR_005037325.1 mRNA downstream 57403 13450157 ~ 13451678 (+) False LOC118941043
XM_021570794.2 mRNA downstream 82320 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA downstream 82324 13475078 ~ 13503268 (+) False LOC110495498
XM_036951883.1 mRNA downstream 82324 13475078 ~ 13503268 (+) False LOC110495498
XM_036951881.1 mRNA downstream 82326 13475080 ~ 13503268 (+) True LOC110495498
TU1737133 other upstream 201949 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 447535 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 453751 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 517866 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1448924 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 1042008 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1106032 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1163572 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1421228 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1505502 14898256 ~ 14900172 (+) True il8r

Expression Profile