RNA id: XR_005037325.1



Basic Information


Item Value
RNA id XR_005037325.1
length 438
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC118941043
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13450157 ~ 13451678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agagagtgctggaaggatctatgaacaatagagaaagagacaatagaaattggctggatttaccgtgtatgagctggactgttttggacttacctgttggtgtttggacctggacctactGAGAACCCGATTTGTGTaccgaaccctgctatccttgatctcgcctacggcctgggtggaccaggactgagaaacaaacacacagTTACccccgctctgactctggtccctgtctccagttccACGTCTCGTCATCCTGCTACTCTTTCCTGGATTCTccactctactactcccttggattcccctccggacctgcttaccctgtcccaactcctctcgctccagcctcagcacCTGTTTTCCTGCAACCCAACcgagcttcccctggcctgcactccctcttccccctgtgtttaaataaataccttggttacttca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1738190 lncRNA upstream 9327 13440560 ~ 13440830 (+) True G1518359
TU1738100 lncRNA upstream 147346 13302593 ~ 13302811 (+) True G1518292
TU1737139 lncRNA upstream 231496 13218447 ~ 13218661 (+) True G1517551
TU1737132 lncRNA upstream 264078 13185844 ~ 13186079 (+) True G1517544
TU1737131 lncRNA upstream 268000 13177116 ~ 13182157 (+) True G1517543
TU1738208 lncRNA downstream 15602 13467280 ~ 13519064 (+) True G1518374
TU1738262 lncRNA downstream 108145 13559823 ~ 13560040 (+) True G1518414
TU1738264 lncRNA downstream 109919 13561597 ~ 13561803 (+) True G1518416
TU1738270 lncRNA downstream 116997 13568675 ~ 13568877 (+) True G1518422
TU1738275 lncRNA downstream 126418 13578096 ~ 13578352 (+) True G1518427
LOC118941100 mRNA upstream 57403 13390029 ~ 13392754 (+) True LOC118941100
XM_036951879.1 mRNA upstream 315314 13133117 ~ 13134843 (+) True LOC118941099
XM_021570802.2 mRNA upstream 317948 13102629 ~ 13132209 (+) True LOC110495507
NM_001171859.1 mRNA upstream 369338 13075064 ~ 13080819 (+) True gp91phox
NM_001165113.2 mRNA upstream 551422 12886095 ~ 12898735 (+) True cd3z
XM_021570794.2 mRNA downstream 23396 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA downstream 23400 13475078 ~ 13503268 (+) False LOC110495498
XM_036951883.1 mRNA downstream 23400 13475078 ~ 13503268 (+) False LOC110495498
XM_036951881.1 mRNA downstream 23402 13475080 ~ 13503268 (+) True LOC110495498
XR_005037378.1 mRNA downstream 64664 13516342 ~ 13518076 (+) True LOC110495496
TU1737133 other upstream 262077 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 507663 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 513879 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 577994 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1509052 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 983084 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 1047108 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1104648 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1362304 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1446578 14898256 ~ 14900172 (+) True il8r

Expression Profile