RNA id: XM_021570794.2


Basic Information

Item Value
RNA id XM_021570794.2
length 4198
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC110495498
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13475074 ~ 13503268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGTGCAAACAGGTTGCGCGTAAACATGCTTTCAACAATTTCCTGTTAACGCTAGAGGCGCCTCTGTTGTTGATGGCTTCTTGCTGCTAGATTGATGTAGCATTTTACTAGAAGCAGtcatcccttgcttgctagccaaTATGATAACATTTAATTGGTTGCAAATTACAACGTAATGGCGTCTTTACAATGCTTCTTGTTTTCGTTCGTTAGCCATCTTTCCGTCTGATTCAGCACCCTTGACAGTTAAATGGCAGTTCCCTTCAAAATCCCCAAGAGAAAACAGCCATCAGAAGCTGACAACATGCACATGCAGTCCCCTCTCTCACGTCTCCGGGATACCTCCAGCCCATTCGAGACAAGCTGGTGCAATGGCTCTTCAAATGGAAAAAGGCCTGAACAGGTTGGCTCTCTGAATGGACACATCCCCAGAGCAGGGAAACAGAGcaCTCCTAACCGGCTACTTCTGAGGGATGTCTGTGAAGCGCGTCTTGGACCTGGCCAATCGGACAAATGGACCTCCAGCCAGTCAACAGGCTTCCAGAGACCAGCTCAGACCCCAGAACATCATCCACCGTCCAGAACACCTCACATCCAATCAAGCCCTgtgacatcatcatcaacacacaaAGCTGAACAAAGACTCCCAGCAGCCTCTCCTCCCTGCTTCAAAAATGGATGGCGCCCTAAGAGGGCATCAGACACACTGTGTCGGGACAAGAATCAAGAGACTGGGTGTGTGTCGCCACTGCTCAAGACGCGCCGTGCAGAGTTCAGTGGAGATTCCCAAATGTCTGTGAGATGCAGCCCAGTGCAGTCGGAGCAGGATTCTGCATCAGAACCATCTCCAGAAAGAGAGGTGGACAGTTCCTCAAAGACGGACGAcaggctctctgtctccccaggaGACTCAACATGGAGGAGACATGACTCTGGGATGAATGGATCTCCTCCACAAAACACAGAGgaggggaagggaagTTCAGGATCACTGCAGAAACAGATCAAGAGGACTAGTGGTTCACCAGGGACGGGCCCCAGGGGAAGTGTCCCTGTCCCAGCAGGCCACCGAAGCCAGAGCCCAGATAGTGACGACCCTCCCGACCGCCCCTTGATGTCAGGGGCCAGAGGTGCATCCACAGGGTCCCCGAGACACCCCCTCTCCGCTGTGGCTTCAGTGACCCAGGCCACACAGGAGAAACGGTTTTCCTTTAGCAGGCCTCCCCTACGGGCTAAcctcacagacagagagagcagacctCCCCTCCGGGCTAAcctcacagacagagagagcaggccTCCCCTCCGGGCTAAcctcacagacagagagagcaggccTCCCCTCCGGGCTAAcctcacagacagagagagcaggccTCCCCTACGGGCtaacctcacagagagagagaggaggcctccAACCaagtgtctctccctccatctcaggCTGAGGAGGCCCAAGCCCACTTCCACAGAACCTAttgtGCTTTCcagtgaggatgaggaggacatGGATGATGAAGAAGAGTGCCCCAGGCTGAAGACCCCACAACAGAGCCCCAGGCAAGGCCAACCCACCCCAGAGGAACATGTACCCAAACAGGCTGTGGTTGGAGAGAAGGTCACAGGGTCACAGAGCGTATCGGAGCACCAACCTGGCAGCACACAGCCACTGCCTCCTATCATGGAACTGTCCTTCTCTACACTGCACGCTGGGGTGGTCCGAGCGCAGGCCAATGGAAACCTGGTGGTAACAGATGATGGCATCACTCTACCGCTGAAAGATTCCAGGGTGTCATCCGAGGAGGAGGGGGGACTGTCGGTGAGCCTGGTGGCGTCCCAGCTCAGAGGGTACGCGGTGTGGGACGGGGGTCTAGCGCAAGACGGGAGTCTCTTCCAGGGTTGTCCCGGCCGAGCGGCCCCCTCCCTGCTCTTCCTCTGGGTGTCTGAGGCCCAGGCCAACCTGGTACAGACAGAGCTCTCAGCCCTCCACCCCGTTACACTGCCTGGTCAGGCCTGTCCATTCCTCCTCCTGGTCCTAAGAGAACAGCTAGGTGATCTGCAGGCTGCTCTGCTAGCCTCCATGCTGGATGTAGAGGCCTTCCGTCAGGGCCGCTCCTACGACCTGAAGAGTCCCCTGTCCTGGGCAGACGGCCTGGCACTGATACACAGCTGTCCCCAGGACGCCCACCTCCTCACCCTGCTGGGGCAGAGCCTGCTGGCAGACCCCAGCCTGGGGACAGCAAAGGGGAGCCCCAGTCGGACCAGAGGGAACCACAGAAGCAGAGAGCCTTACTCCAGACTCAAGGGCCTGCTGCCCACCAGGTTGATCCAGTACCCACCACTCCCTTCTAAAGGAGGAATCACCGTGACAACAGAGGACCTAGACTGTCTGGACAGTGGCCAGTTCCTCAATGATGTCATCATCGACTTCTACCTTAAGTATCTTCTCCTGGAGCGGGCCCCGGGGCCCCTGGCAGAGAGATGTCATGTCTTCAGCAGCTTCTTCTACAAGCAGCTGACCCGCCGGGACACGTCCCTGGAGGAGGAGGCTGCCATTCCaGCCAGGGACAGGAGACACCAGAGGGTGAGGACGTGGACCCGCCATGTTGACATCTTCAACAAGGACTACCTGTTTGTGCCGGTCAATCACAAAGCCCACTGGTACCTTGTGGTGATCTGTTTCCCTGGCCTGGAGCAGGCCCAGCATGAGGAGTGGTCTGGCCTAGCTGGAGTGGAGGCCAATGGGGGGAAGAGGAAATGCCAGCCCCAGGCTTCAACTGGGCCTTCTCCAGAAGCCAGCAACCCCAAACTGCAGAACGGAGCAGGTGGAACAGGTGGAGACAGTGGGAAACCTACATTGAGGACCCACAACCCACCAGCGTGTACCCAAGATGGTTGTCAGAGGGAGACCATCATTAAGAAACCCTGCATTCTCATCATGGACTCCCTGAAGATCTCTTACCATGAGAGCATCTATAAGCTCTTGCGGGATTACCTACATGTAGAGTGGGAGGTGCGTAGAGGAACACGCAGAGACTTCACTGTAGACAGTATGAAGGCTTCCCACTGTACAGTCCCTCTACAGAACAACAGCAGCGACTGTGGCCTCTACCTCCTGCAGTACGTGGAGAGCTTTCTGCAGAACCCAGTGGTGCACTTTGACCTCCCCCTGCGTTTGGAGCGCTGGTTTCCACGGCAACAggtgtggaggaagagggaggagatccGGAGCCTGGTGATGGAGCTGCACGGTCGCCAAGGCAATGGCGGGAGCAGCTGCAGGTAGCCAAGGTACCTGATCAGCAATGCACTACTACTACAATACCCCTAAACTGTGAAGGACTTTTACTTTTTAAATGTACAATACATGTAATATCTATTTTTGtattactattttttttaaataaaatgtcacAGGATGTTTGTTTCTCACTTGTATGTAATGTGCATGTACAAAATAATAGGATTGTAAAATTGAATAAAATTGTTCATGTAATGTTTAGTTTTTATGTTATGTTATAGAAGAGAGCATTTGGAATGGACATTATTACACAAGGATATGAGTGAGTGCTCAAATCTAGTTTGCTGAGCAAAAGTGTAACTCATGTACCCAGAACAGGTTTCTTTTTCAAATGTCCTTATGACTCACACATAAAACCACTATAAATATTAAAGTCAATATTACTCAGTTATTCCTGTTCAGTGTGTCAGGCTGCTGTTTCTGACCATAAAGGACTCAATATGCACATGATTGTTTGCAGCTGCTAAACAATAGTGTTATCACTACAGACAAGTCAACACATTGGCAGTGTTTTAGTTTTGGCTCCTCATGTTGTAGCTGCTTAGTTTGTAAGGAAAACCCCGTGTTCCAGTGGGGAACACTGAGTAAGCTTACACAATGACCACTTGTAATATGATGATTAGAACAGCACCTCTCCCCTGTTCTGTTTACAGGCAGAACTCAATTCCCCTTTGTGTTTGTGCTGTATGAAAGTCTATGGACCTGACTCACTCTGTCATAAGAAACAGAAATAACATTCTCCCCACACAGTAAGGGTTTCCATTTGAGTTTCTGTTTGTTTTCACGGTGTAAACATTGATTTGTTAATGGCATGTTTATAATgatgtatttacaatgatgtatTTATAATGTGGTATATTCCTGGATTAAAGATGCCCCCAAAGTCTACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738196 lncRNA upstream 23397 13450302 ~ 13451677 (+) True LOC118941043
TU1738190 lncRNA upstream 34244 13440560 ~ 13440830 (+) True G1518359
TU1738100 lncRNA upstream 172263 13302593 ~ 13302811 (+) True G1518292
TU1737139 lncRNA upstream 256413 13218447 ~ 13218661 (+) True G1517551
TU1737132 lncRNA upstream 288995 13185844 ~ 13186079 (+) True G1517544
TU1738262 lncRNA downstream 56555 13559823 ~ 13560040 (+) True G1518414
TU1738264 lncRNA downstream 58329 13561597 ~ 13561803 (+) True G1518416
TU1738270 lncRNA downstream 65407 13568675 ~ 13568877 (+) True G1518422
TU1738275 lncRNA downstream 74828 13578096 ~ 13578352 (+) True G1518427
TU1738282 lncRNA downstream 84727 13587995 ~ 13588199 (+) True G1518434
XR_005037325.1 mRNA upstream 23396 13450157 ~ 13451678 (+) False LOC118941043
LOC118941100 mRNA upstream 82320 13390029 ~ 13392754 (+) True LOC118941100
XM_036951879.1 mRNA upstream 340231 13133117 ~ 13134843 (+) True LOC118941099
XM_021570802.2 mRNA upstream 342865 13102629 ~ 13132209 (+) True LOC110495507
NM_001171859.1 mRNA upstream 394255 13075064 ~ 13080819 (+) True gp91phox
XR_005037378.1 mRNA downstream 13074 13516342 ~ 13518076 (+) True LOC110495496
trnaa-ugc-135 mRNA downstream 13694 13516962 ~ 13517036 (+) True trnaa-ugc-135
XM_036951884.1 mRNA downstream 16890 13520158 ~ 13556352 (+) True LOC110497006
XM_021570774.2 mRNA downstream 89712 13592980 ~ 13622818 (+) False LOC110495495
XM_021570775.2 mRNA downstream 89712 13592980 ~ 13622818 (+) False LOC110495495
TU1737133 other upstream 286994 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 532580 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 538796 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 602911 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1533969 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 931494 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 995518 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1053058 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1310714 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1394988 14898256 ~ 14900172 (+) True il8r

Expression Profile