RNA id: XR_005037378.1



Basic Information


Item Value
RNA id XR_005037378.1
length 164
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110495496
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13516342 ~ 13518076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTAACTTATGTCAGGATGGAACTGTCAGCGTGATGGAGATTGGCAGCAACTTCAGCCGATCAGAGGAGCACGTCTCTCTTGTTAGGGCTAGAGTGGTGATGACTGCTGCTCCGAATAGTCCAACCGCGGCAACTCCACCAGAATTGGCCACCACCCAAAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1738196 lncRNA upstream 64665 13450302 ~ 13451677 (+) True LOC118941043
TU1738190 lncRNA upstream 75512 13440560 ~ 13440830 (+) True G1518359
TU1738100 lncRNA upstream 213531 13302593 ~ 13302811 (+) True G1518292
TU1737139 lncRNA upstream 297681 13218447 ~ 13218661 (+) True G1517551
TU1737132 lncRNA upstream 330263 13185844 ~ 13186079 (+) True G1517544
TU1738262 lncRNA downstream 41747 13559823 ~ 13560040 (+) True G1518414
TU1738264 lncRNA downstream 43521 13561597 ~ 13561803 (+) True G1518416
TU1738270 lncRNA downstream 50599 13568675 ~ 13568877 (+) True G1518422
TU1738275 lncRNA downstream 60020 13578096 ~ 13578352 (+) True G1518427
TU1738282 lncRNA downstream 69919 13587995 ~ 13588199 (+) True G1518434
XM_021570794.2 mRNA upstream 13074 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA upstream 13074 13475078 ~ 13503268 (+) False LOC110495498
XM_036951883.1 mRNA upstream 13074 13475078 ~ 13503268 (+) False LOC110495498
XM_036951881.1 mRNA upstream 13074 13475080 ~ 13503268 (+) True LOC110495498
XR_005037325.1 mRNA upstream 64664 13450157 ~ 13451678 (+) False LOC118941043
XM_036951884.1 mRNA downstream 2082 13520158 ~ 13556352 (+) True LOC110497006
XM_021570774.2 mRNA downstream 74904 13592980 ~ 13622818 (+) False LOC110495495
XM_021570775.2 mRNA downstream 74904 13592980 ~ 13622818 (+) False LOC110495495
XM_021570776.2 mRNA downstream 74904 13592980 ~ 13622818 (+) False LOC110495495
XM_021570777.2 mRNA downstream 74904 13592980 ~ 13622818 (+) False LOC110495495
TU1737133 other upstream 328262 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 573848 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 580064 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 644179 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1575237 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 916686 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 980710 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1038250 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1295906 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1380180 14898256 ~ 14900172 (+) True il8r

Expression Profile