RNA id: trnaa-ugc-135


Basic Information

Item Value
RNA id trnaa-ugc-135
length 75
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaa-ugc-135
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13516962 ~ 13517036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcccgtgtagctcagttggtagagcatggcgcttgcaacaccagggttgtgggttcgattcccacggggacTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738196 lncRNA upstream 65285 13450302 ~ 13451677 (+) True LOC118941043
TU1738190 lncRNA upstream 76132 13440560 ~ 13440830 (+) True G1518359
TU1738100 lncRNA upstream 214151 13302593 ~ 13302811 (+) True G1518292
TU1737139 lncRNA upstream 298301 13218447 ~ 13218661 (+) True G1517551
TU1737132 lncRNA upstream 330883 13185844 ~ 13186079 (+) True G1517544
TU1738262 lncRNA downstream 42787 13559823 ~ 13560040 (+) True G1518414
TU1738264 lncRNA downstream 44561 13561597 ~ 13561803 (+) True G1518416
TU1738270 lncRNA downstream 51639 13568675 ~ 13568877 (+) True G1518422
TU1738275 lncRNA downstream 61060 13578096 ~ 13578352 (+) True G1518427
TU1738282 lncRNA downstream 70959 13587995 ~ 13588199 (+) True G1518434
XM_021570794.2 mRNA upstream 13694 13475074 ~ 13503268 (+) False LOC110495498
XM_036951882.1 mRNA upstream 13694 13475078 ~ 13503268 (+) False LOC110495498
XM_036951883.1 mRNA upstream 13694 13475078 ~ 13503268 (+) False LOC110495498
XM_036951881.1 mRNA upstream 13694 13475080 ~ 13503268 (+) True LOC110495498
XR_005037325.1 mRNA upstream 65284 13450157 ~ 13451678 (+) False LOC118941043
XM_036951884.1 mRNA downstream 3122 13520158 ~ 13556352 (+) True LOC110497006
XM_021570774.2 mRNA downstream 75944 13592980 ~ 13622818 (+) False LOC110495495
XM_021570775.2 mRNA downstream 75944 13592980 ~ 13622818 (+) False LOC110495495
XM_021570776.2 mRNA downstream 75944 13592980 ~ 13622818 (+) False LOC110495495
XM_021570777.2 mRNA downstream 75944 13592980 ~ 13622818 (+) False LOC110495495
TU1737133 other upstream 328882 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 574468 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 580684 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 644799 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1575857 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 917726 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 981750 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 1039290 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1296946 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1381220 14898256 ~ 14900172 (+) True il8r

Expression Profile