RNA id: XM_021570776.2


Basic Information

Item Value
RNA id XM_021570776.2
length 3749
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC110495495
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13592980 ~ 13622818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCGTGGTCCGGTGGTCCTCTCTACTCCACAGTGTTTCCACGGAGCGCTGCACAAGTCCTAAATTGAGTTGCTACCTTAGTGAAGTTGTCCAGCATCCCTGTCCAGAGAGCTCTATAGCAGGCACCATGCTCCTCAGAgtccctctcctgctcctctccggATCCATTCTCCTCAACTGCATCCCTGCACAGAGGATTAGAGTGAGAAGACAGAACATGAAGGTTCGCATCAACGCTACGGGCGACACCATCGTGATGAAGTTTGTCCGGCCCAACCCTGACACCAAGCTGGAGGGCTACATCCTGGGCTACGGCAGCAGCATGTTCTCTAAACAGTTCATCCAGCTGCCTGAGAATGGAGAGCCCTACGAGACTGAGATAGACGCTGAACCCAAGTATCTTGTTGCTGTCCAGCCAATCCCGAGCAACGACGTAAAGAAACAATGCACAGGGAAGGTCAACCTGGAGAAGCCACTCCACCTGGTTATTGGCTCCGTCACCCCAACctctgtgctgctgtcctggggaaCCTTCCTGAAGACGCCCTACGAAGCAGGCAACATCATGAACGGCTGTTTGGAAGACGGACACTACACCGTCCGctacagggagaggaacaggaagtgGATCTACCAGACCTGCCCAACCAGCGACACTGTGGTTGACAACCTGAAGCCCGACACCCCATATGAGTTTGGGGTCCGCTCCAACAAAGACGAACGCAGCGGAATCTGGAGCAAGCCTGTCATTCACAAAACCAACATGGgcgcagggttggACAAAAGCGTCCAGAAACCCTACAAGCACCGGACCCCTATTGTGAAGCCAATGAAACCACCCATGTCCCGTGCACTTTTCCCACCTCGTCCAGCTATTCACAATAAGACTCAGCCTAGACTCCCTCTGACCAAAAACCAAGGTTTCCCAGGAGCTCCCAAGACATCTTTTGCACCACCAGAGAGACACCTGGAATCTAGACCTGACCCCCGCTCCAATGAGCCTCAatggccacagttcccactggACGGAGGAAACAGTATTAGAAATGCTTCCTCTCATCTCGTGGACCTCCCTCCTGCCCCCCCCCAACTCCTGCCCACCAAAACCCCCAGTACCTCCTCTGCCACCCCTGTCCTTAACAACCCCTCTCCACACGGTGAAAAGCAACAGGGAAAGACCCAACCCAGGGGACCTACTAGCGCCACAGTGAAGCCACATAACCCTTCCTCTGCTCTCAGCGAAACACAGAAAGGAGCATCACTGCTAACCCCCGCCCTGGGCAGTGAGAAAGTCAATAATAACAACTTGGGTCAAGGCAACCAGAGAAATTTGAAACCCCATGGCCCGGCCATCACACTGATAGCCAGGACCATGAAGTCTCCTGCTGCCACaaaccctctctttcccttcacTGATGGCTCAAGACAAGAtaccccatcctcctcctcctcttcttcctcatcctcctcctcatcccttctTCACAGGTCTAATAACTCATCACAGACCTCCGGAACACCAAGGGGTCAAGGCAGCCAGAGAAATTTGAAACCCCATGGCCCGGCCATCACACTGATAGGCAGGACCATGAAGTCTCCTGCTGCCAccaaccctctctttcccttcacTGATGGCTCAAGACAAGattccccttcctcttcctcatcccttCTTCGTAGGGCTAATAACTCATCACAGACCTCCAGGACACCAGGGGCCAATGGTAAGCATCACAAAGGAACCGGCCTCCCCAAACCAGTCGTTTGGAACAGACTGAGAATGGGATCTCGTCCCTCCATTCCTGTCAACAAAAAGACCAACCTGGTTGGCAAACCTGGTGATATGAACAAGCTGAATGTCTTGAAGCAAACAGACAAGGCCTCCATTTTGAAGAAGTTTCCATCAGTGACGACTAAACCTGCCAAGCAAGACCGCAGACACACAACAACGACTGCACCATCAGTCAACGACATCTGGTTTGAAACCTGGGAGAACTCCTCATTATTCAGCTCCCTACCAGCCTCTGACGTGGACGCATTGGGAAAGAAACGTTTCGTTGCACCCCATGTAGTCTACAAGACGGACAAGAAACCAGACGAGCCTTGTTCCATCACCACCTCTCTCAGCTACTTCCCAGAGGAGGAGGGCGGGGAGACAAACGTGACAGCCCCGCCCAAGTCTCCGCCCTACAACCTCACCGTGGTAACGGTGGAGGGATGCCCCTCCTTCATCATTCTAGACTGGGAAAAGACAGACAACGACACCACAGAATATGAGGTCATCTCCACGACGAAGGGACCAGATGGTACTCAGGTCTCCATCCTGACCACCAACCAGACTCACACTGCAGTAGAGAACCTCAAACCCGAGAGcagCTACGAGTTCAAGGTGAAACCCAAGAACGAGCTTGGAGAGGGGCCACCCAGTGAGCCTGTGTCCTTCAACACTGAATCAGCGGACCCACGTGTGAGTGAGAATGTCTCAGGAAAAGATGCCATCTGGACCCAGTTCCCCTTCAAGACAGACTCATACTCGGAGTGCAATGGCAAGCAGTATGTAAAAAGGACCTGGTACCGCAAGTTTGTGGGCATCCAGCTCTGCAACTCCCTCCGATACAAGATATATCTGAGTGATTCTCTCAATGGTAAATTTTACAACATTGGGGACCAGACTGGCCATGGTGAGGACCACTGTCAGTTTGTAGACTCGTTCCTGGATGGAAGGACAGGAAACCAAGTCAGGGCTGACCAGCTGCCAGCAAGAGAAGggtattacaggGCTATGAGACAAGAGCCGGTCAACTTTGGTCAGATAGGAGGGAACTCTCACGTCACCTACGTGTCATGGTATGAGTGTGGAACGGCCATTCCTGGCAAATGGTAGGACCCCCCCAAAGCTGTCTGTGGAGAAGCCCGaaggatatacagtacatatcaaaCCGTCTGGGAAGGTGGCAGGAAGGGTCCTTCTACACATCCAATCAGTCTCTGGATGCTACATATCCCCATCCATCCGCCTCCGAACCCCAGCCATGTAAAAACCTGTACAGGATCTCCGGGTCAGGTTAATATAATGTCCATATGTAATAGCCTTATCTTATTTATCAAACATGACAAAAAGGCAAACGGATAAAAAGAACATAGTATGAGATAGATGGAGAAACTTCTAACAGTGTGAGGTAACAAACATTCAGTAGGTATCTTTTTTGTTTTAATAATGGGAAGCTGGCTCCCTGAAACTTATTTTGATAACGTGTATAATATTATTTATCAAAGTGTTTGATGCCATGTTCCGAGTTGTAGGAAATGGGTTATAATGCAAGGCTTTTGCTGTACAGTACGAGTTGTAGAGTTTCAGACAACCTGCCGGAATTTCATGGTTTCATTCAGTGACCGATTCATGGTGCAAGAATTGTTCCATAATTTGGTCagtcttagggctctattcaatccgtatcgctgaAGCTCAGCGTTGCGGcgcgattgaaatttaaaggcaatattcCCGagttagcggagactgcattcatggtaaacgctgcatatgtcggctcaatgggaaatgacctttacatttccaTCAcgcaatctgtaacgcttcagcgaAACAAATTGAATCCAGCCCTAGTTCAATATACACCTTCAGAGAAGATAATGCTGTAAATATTAACATGAAGTCCACTCTCACACATATCCActaaccagtggaggctgctgaggggaggacggctcataataatggctggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738282 lncRNA upstream 4781 13587995 ~ 13588199 (+) True G1518434
TU1738275 lncRNA upstream 14628 13578096 ~ 13578352 (+) True G1518427
TU1738270 lncRNA upstream 24103 13568675 ~ 13568877 (+) True G1518422
TU1738264 lncRNA upstream 31177 13561597 ~ 13561803 (+) True G1518416
TU1738262 lncRNA upstream 32940 13559823 ~ 13560040 (+) True G1518414
TU1738301 lncRNA downstream 13746 13636564 ~ 13636959 (+) True G1518453
TU1738327 lncRNA downstream 55276 13678094 ~ 13719402 (+) True G1518478
TU1738340 lncRNA downstream 66223 13689041 ~ 13710674 (+) True G1518491
TU1738356 lncRNA downstream 87948 13710766 ~ 13715402 (+) True G1518500
TU1738364 lncRNA downstream 173794 13796612 ~ 13799961 (+) True G1518505
XM_036951884.1 mRNA upstream 36628 13520158 ~ 13556352 (+) True LOC110497006
XR_005037378.1 mRNA upstream 74904 13516342 ~ 13518076 (+) True LOC110495496
trnaa-ugc-135 mRNA upstream 75944 13516962 ~ 13517036 (+) True trnaa-ugc-135
XM_036951883.1 mRNA upstream 89712 13475078 ~ 13503268 (+) False LOC110495498
XR_005037558.1 mRNA downstream 188418 13811236 ~ 13811288 (+) True LOC118941229
XM_021570760.2 mRNA downstream 261138 13883956 ~ 13969189 (+) False LOC110495487
XM_021570761.2 mRNA downstream 334640 13957458 ~ 13969189 (+) True LOC110495487
XM_021570759.2 mRNA downstream 352292 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA downstream 352296 13975114 ~ 13979887 (+) True LOC110495485
TU1737133 other upstream 404900 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 650486 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 656702 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 720817 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 1651875 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 811944 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 875968 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 933508 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 1191164 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 1275438 14898256 ~ 14900172 (+) True il8r

Expression Profile