RNA id: XM_021570761.2


Basic Information

Item Value
RNA id XM_021570761.2
length 3917
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110495487
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13883956 ~ 13969189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTGATGATGTAATGCTCCATAGGCAGGGAGCATGCAGTGAGACATATCTTATTGTTTGGTCTCCCTGCTGGAATGTCCACATCACAGACCGCTGTGTGAgagctgagagacagagagagtacgGCAACATAATGAGCTTCAATCACTGAGGCTGCCACCAGACAGACCTATGGAACAGACTGAAGTTGCTCATTGACCAGGAAAAGGCCTATcaggaaaggaaagaggaggagaacaaCAAGAAGGTCAGCAGCCTAAAGGAGGAGCTGACCAAGCTGAAGTCGTTTGCGTTGATGGTCGTGGACGAGCAGCAGCGCCTCACAGAGCAATTGACCCAACAGACTGCTAAGGTCCAGGAACTGACTGCCAACGCCTCCCACACCCAGGAAGAGCTGAGCTCTGCTAATGCAAAGGTgcaagagggggaggagaaagttTTTCGCTTGGAGACAGAGCTAGGCGACCAATCCAGTCGCTTTCACCAGGAACAGGAGACCATGACAGCCAAACTGACCAGCGAGGATGCCCAGAACCGGCAGCTCAAGCAGAAACTGTCCACACTCAGCCGGCAGCTGGAtgaactggaggagaccaacaagACCCTCCGGAGGGCCGAGGACGAGCTCCAGGAGCTGAGGGACAAGATCAGCCGCGGGGAATGTGGCAACTCCAGCCTCATGGATGAGGTGGAGGAGTTACGGAAAAGGGTTCTGGAGATGGAGGGGAAGGACGAGGAGCTGGTCAGAATGGAGGACCAGTGCAGGGACCTCAACAAGAAGCTGGAGAAGGAAGCCAGCCAAAGCCGTAGCCTGAAGGCTGATGTGGACAAGCTGAACCACAGGATCATGGAGCTGGAGAAACTAGAGGATGCGTTCGGCAAGAGCAAACAGGAGTGCAACGCGCTAAAATGCAATCTGGACAAAGAGAGGACAGTGTCAAatgttctgtccagggagatgGACATCCTGAAAGCAAGGGTCAAAGAACTGGAGGCAGTGGAGGTTCAGCTGGAGAAGACAGAGCTTACACTAAAGGAAGACCTCACCAAGCTGAAGACGCTGACGGTCATGCTGGTGGATGAAAGGAAGACCATGGCGGAGAAACTGAAAGCGATGGAGGACAAGGACCATAACAGCACTGGCAAACTGCATGCTGAGCAGGACAAAGTCACAACAGTAACAGAGAAGCTTATCGAGGAGAGCAAGAAAGCCCTAAGGTCGAATGCTGAGCTTGAGGAGAAAATGTGTGGCGCCACCAAGGACAGGGATGAACTCAAGGCCAAGCTCCAAGCCGAGGAGGAAAAGAGCAACGACCTGCAGTCCAAAGTTACCATGATGAAGAAGAGGTTGCATTCACTGGAAGCTGCAGAGAGGGAATTCCTGAGGAACAAAGCCAAAGAGGAAAACATCAAGGAGCCCATCGCCAACCGCTCCCAACAAGAGGACTACAAAGTCAAAGACCTTACGCAGGAAGTTGAGCGCCTGAGGCGAAAACTTAAAGATATGAAGGTTGTCGAAGACGACTTGTTGAAGACTGAGGATGAGTTTGAGTCCATGGAGAAGAGATACTCCAGGGAACAAGAGCGAGCAAAGGCCTTGATGGAGGAGTTGGAAATATCCAGAAATGAGCTTTTAAAGTACCAACTGGCAGAGAAGCAAGAGTCCAACCAGGAGCACATCCTCTACAGGCGTCTGAAAGAGGAAGAGGCCAAGTCCAGTCATCTGACCCGAGAGGTGGCGGCCCTAAAAGAGAAGATCCATGAATATATGGGCACAGAGGAAAACATCTGTCGCATGAAAAACGATCACTCCACCTTGCAAAGAAAACTGACTCTGCAAGAGGTGAAAAATAAAGAACtggccagagagatggagacccTCAATCGGGAGCTGGAGCGATACCGTCGCTTCAGCAAAAGTCTCCGCCCAGGCATGAATGGCAGACGTTTCTCAGACTTACAGGTGTGCACCAAGGAGGTACAGACAGATCTAGCAGACCACCTTCGACCCAACTACAAGAGCATCGCCCCACTGGAGCGGGCCGTGGTGAACGGAAAACTGTACGAAGAGAGTGACTCTGAGGACGATCCAAACTACAACAATGAGCTGCCCCTCGCCCAATGTAACCCCTCCCTCTTCAACAATGTCAACAACCTCAACAACAACATCAGGAGAGTCCCCTTTCTCAAAACCAAAGAAAGCCACAACCAAGTCAATGGGAAAGTGCAGGTTCCCAGACAGAATGGGAACCATGTGCAGCAAGGAGACGTGTTTCTGACACACAGCCCCGGGCAACCACTGCACATCAAGGTAACCCCAGACCACGGGCATAACATGGCCATGCTAGAAATCACCAGCCCCACCGCAGAAAACACCCAGTCATACACCAGCACTGCAGTCATCCCCACAAGCGGAGGTCCACCCAAACAAAGAATCACCATAATTCAGAACGCATCCATCTCCCCGACTACCAGAAACAAAGCTCAAAGGTCCCCCTCGTCAGATGGTTCCCCCTGCACTCCTGATCGAGCCATATCTCCCTTCACCATGACCACCTACTCTAGAGCGATGACCCCAGACTCCTCTGGGTCGGTCACACCAGACAGGGCTATGTCACCCATCCAGATCGTGTCGGTCACAACAGGCACTCCTGACCGGTCCCTGTCCACGGAGCCAGTAGAGGTCATGGGAGGTCATGCAGTCTTCAGGGTGACACCAGAGAGGCAGAGCAGCTGGCAGGTTCAAAGGTCCAACAGCTCCGGCCCCAACGTCATCACCACGGAGGACAACAAAATCCACATTCACTTAGGGAGCCCCTTCATTCAGAGCTTAAACACTACACCCCAGCCTGTGAGCCCATGCTACTCACCTGGGCAGGAGCAGAGATCTCCTGTATTATCCAATGGTACCCCTGTCAAAGGCAACAGCAAAATCACAAGTAGCATCACTATAAAGCCAACATCCACCCCAATCAAAAAGCCTTCACAAATTACAATCCCCTTGGAAGCATTCCGACGCCCAGGTCCAACCAGGATCCCCAAACCTAAAGCCTACGGTACAAAAGGAACAAACAGTGCGGTCAATCCAGGGCAGAGCAATAAAGGACAGCCCCAGACAGCTCTCTCCTCAGAGAAGACGCTGCAGGGTACTCAGAGTGCAGCCAACAACCTAAATGTGGTCAACCGCCCCACTAGAATATAACATCACACACTTGGATGTATCATCACATTATGATCTCAATTATGATGTAGTCCTGTTGCTACAAAGACTTCTGCTTTTGTGTGCCTCGGTATTGATAATGAAAACACCAAAATAGGAAGATGAGTAGGACAAGGTTAACTAGCATATGTGTTTCACAAAGAAAAATTCACTGATCTGTCTGTGTAAGCAGCAGGGGCGCACATTTTCCTGGGGACGGGGGGGGGACATATCCCCAGTTTtataattggaatgtgatacaaaacgaggcaatggtgtactttaggaccatgtggacacctcggAGTGGTTGGGtaggaaaaataaaaaataaaatatatatatcatgtCCCCCCACCTCTAAAACTAAAGTTGCACCCCTGGTGAGCAGTAATTGCAATAATTTATCaattatgatatatatatatatatatatgggataTTAGGCTACTGTTCTTACTAATACCATTAAAATATGAATGTGTATTATCCCCTTGAAACATGAACTGTATTGCTATTTTAATGTGGTAGACCTATCTAATATACATCCACTACTTAATTAGTCTAATTCTGTGAGTGGCAAAAAAAAGGAATGCTATTAACAGTTTCAATAATGTACATGTGTATTATTGGTATTTTATGTTGAATGCTGAAGACTGAAATGTAATGATCAGACTATTAATTGGTTATCAATAAATATTGTTTTTATacctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738422 lncRNA upstream 150765 13803381 ~ 13806693 (+) True G1518557
TU1738364 lncRNA upstream 157497 13796612 ~ 13799961 (+) True G1518505
TU1738327 lncRNA upstream 238056 13678094 ~ 13719402 (+) True G1518478
TU1738485 lncRNA downstream 116 13969305 ~ 13969757 (+) True G1518613
TU1738486 lncRNA downstream 1358 13970547 ~ 13970890 (+) True G1518614
TU1738484 lncRNA downstream 2399 13971588 ~ 13972418 (+) True G1518612
TU1738972 lncRNA downstream 3571 13972760 ~ 13972963 (+) True G1518993
TU1739083 lncRNA downstream 131576 14100765 ~ 14104118 (+) True G1519100
XR_005037558.1 mRNA upstream 146170 13811236 ~ 13811288 (+) True LOC118941229
XM_021570790.2 mRNA upstream 334640 13592981 ~ 13622818 (+) False LOC110495495
XM_021570759.2 mRNA downstream 5921 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA downstream 5925 13975114 ~ 13979887 (+) True LOC110495485
XM_036951893.1 mRNA downstream 117869 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA downstream 117869 14087058 ~ 14485956 (+) True LOC110495483
XM_036951916.1 mRNA downstream 587787 14556976 ~ 14558589 (+) False LOC110495481
TU1737133 other upstream 769378 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1014964 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1021180 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1085295 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 2016353 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 465573 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 529597 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 587137 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 844793 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 929067 14898256 ~ 14900172 (+) True il8r

Expression Profile