RNA id: XM_021570758.2


Basic Information

Item Value
RNA id XM_021570758.2
length 1665
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110495485
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13975110 ~ 13979887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTACATTGACCAATCAGGTTGATGGGTAATGAACCACGTCCGCGCGCTAAATTCTTGCGGCAGTATTTTGTCATACATTCGCGGGAGAACAGCCTTGCAAAGTTTTGTCAGCAGCTATTTAATTTTATGGCATTTATTTTAGGTACTTGGCATGCGGTAGCTGCGTGTTATTAGTACAACCTTCACAGTTTGTTGGCTGCACACTACTAGACAGTTCCCTAGCTAGCTAGACAGCTAACAACATAACTGGCAAACTTTTTGCAAGAGGTCTGTCGTTTTGACCCAAAGTATCTAATATGGCAACTATGTGTCACTCAAGACGTGCCCTGATGGAAATCCCAGCTCCACAGCCGAAAATTGCAGCTCGAATGAGAAGGTCCTACCTGGAGGTTCTAAGTTCACGCATAGCTCCATTCTCAACCACTTCTAGAGGCAGAAACCTGACCAGCAACTCAAAACGTGGGCATTCATTGGACCCAGCCATATACAGAACAGGGAGTAGTCGGAGTGAGGCCCAAAGTGAGAGAATGGAAGACAACCAGACACCCCTGTCCAACCAGCAGCTTGTGCAGCTCATAAGATCTTTCATCCTAGTAGAACAGGGGCAGAGGCAGGAGCCCAGAGCCCTCACTACAGACCTGAAGCCGTTACAGGAGGACTTGCACTTGAAAAAGACCAATGTCTACAGATCTATACCCTACTCACGCCTGGGGTCCAACAGAGACGCGCACTGTTACAGAAAGGCATATCCACACCTGGTGGTGTTTAAAGTTTCCTGCCAGGAGTGGGGTCAGCTGCTGCTGCAGAACGAGGAGTGGGAGTCTGCTCTGGAGCACGCCCTAGTGGCGTGGAGGTACACCAGTGAGCTGCCACAGTGGGACACCAGCAGCCACAATTTGGTGAGGGAACAGTGTTACAGCATGCTGGCAGCCCACTGCATCACAGCTCTACAGCACTACTGCCCAGACCTCAGCAAAGCCATAGAGCTGCACAGGAGGTTTAAAATGGCACAGCTGCACAGTCAGTTGATCTCTCCTTGTATTCAGGAGCTGGAGAGAAGCCTCGGCGAAGCACAGGTTTGTTCCATGAACACCCACTGAAATGGCCAACACTAAGATCAGCTGACAACAATCAGCACGGCTTCCAAGTCTAGGGGGTTGCACTATTGAACAGCGTATATCAGTGGTTGCCATTCATCTATGTTTGGTATCCTTGCCTTGTGTTGCGCTATTCCCCCTTGCCTTGCCTACAGTATTCCCTACAGTAGATATAAGAAAGCTTTGATGCATTTTGGTAAGCTGTTTTTTAAAATATGAATTTAAGCTTTTTGTATTAAGTTGTTTTGTAAAATGTGTTTATTGCCATTGAAATATTGAATGTTATCACAAGGAAATGATGAAATGGCCTTTAAAATGTGAAAGGCTGTCAGAGAAATTATGAACTGTCCTTTTCACCAAGATGTTTTATATGTGGGGGATGTTTTTGTGGATGTGTTGAAAAATGGCAAGATACATGAAACAGCTGCCTTATTTCAACTTGGCTGAATGCTAcctgttttgtaaatatttgtcTAAAGTAACTGTTTTGCACTGTTTTCTTCATCCTGGAAACTTGACATTTTGATAATAGAATCTAATTTAATAAAATTCTACTTTTTCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738972 lncRNA upstream 2151 13972760 ~ 13972963 (+) True G1518993
TU1738484 lncRNA upstream 2696 13971588 ~ 13972418 (+) True G1518612
TU1738486 lncRNA upstream 4224 13970547 ~ 13970890 (+) True G1518614
TU1738485 lncRNA upstream 5357 13969305 ~ 13969757 (+) True G1518613
TU1738422 lncRNA upstream 168421 13803381 ~ 13806693 (+) True G1518557
TU1739083 lncRNA downstream 120878 14100765 ~ 14104118 (+) True G1519100
TU1739130 lncRNA downstream 195712 14175599 ~ 14175914 (+) True G1519138
TU1739131 lncRNA downstream 196070 14175957 ~ 14176276 (+) True G1519139
TU1739133 lncRNA downstream 198101 14177988 ~ 14178201 (+) True G1519141
TU1739134 lncRNA downstream 200071 14179958 ~ 14180180 (+) True G1519142
XM_021570760.2 mRNA upstream 5925 13883956 ~ 13969189 (+) False LOC110495487
XM_021570761.2 mRNA upstream 5925 13957458 ~ 13969189 (+) True LOC110495487
XR_005037558.1 mRNA upstream 163826 13811236 ~ 13811288 (+) True LOC118941229
XM_021570792.2 mRNA upstream 352296 13592981 ~ 13622818 (+) False LOC110495495
XM_036951893.1 mRNA downstream 107171 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA downstream 107171 14087058 ~ 14485956 (+) True LOC110495483
XM_036951916.1 mRNA downstream 577089 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 608764 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 608765 14588652 ~ 14643860 (+) True LOC110495476
TU1737133 other upstream 787034 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1032620 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1038836 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1102951 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 2034009 11940062 ~ 11941105 (+) False G1517150
TU1739079 other downstream 454875 14434762 ~ 14436120 (+) True G1519096
TU1739573 other downstream 518899 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 576439 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 834095 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 918369 14898256 ~ 14900172 (+) True il8r

Expression Profile