RNA id: XM_036951894.1


Basic Information

Item Value
RNA id XM_036951894.1
length 3477
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110495483
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14087058 ~ 14485956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCGGTCCACATAGTGACTGCGGTCTAGCGAGGGCAGGGGAATGAATCTGGTGTCTGGAAATGCACCACTAAATGCAAATTAACTGCAAGGCAAATAGTATTCAGACCTGTATTTATAGTTTCATATTTGGACTGTATGCACATCTGTTTTCTCCATCCACGGTATTTTTCCCCCGGTGCGTCTGTTGGTGCACGAGGACTCTGCGCGGGCTCTTGGACTTGGAGGACGGATCCATCAAACTCGGATTGTGAGTGTTCGCATAGCGGTACACTGAAGGAAAACCTAATCGGATGTGGTATTACAGAATACTTGTGAAATACAGCCTACATTATAGATAGCTCTCTGCCGCGCTGCAGCCTGTGAGGACCGCACGAGTTTTTTGGGTGGAGAAATTGTGTGTTTTGCAGCGGAGAGGTTTGGGGGACTATTTATAACCAAGGATCGGCAGTCTGGAATGTTTGATTTTCTCCTTCGTTATATGTCAACCTTTTTCTCCTATCAGAGTAGATTTCCCCACCGCCGGTCTTAATATTATTTTCAAATTGACCCTCTGCACCTTTTTTTATTCGGCACTGAAAAAAGCAGATGATATGCATATGTTCTTTGGATTAGACCCTGCTGTGGACAATTTGGCTTTTGCGTGAATGGGATATCTGTGTATTAGGCATATTGTTCAACGACCTTTGTATAAGGAGACGAGGCGTGTTATTAGCATTAGCCTACACCGGCATTGTGATGGTGAACTTTTATGATCGGAACTGACAGCGGAATAGGAACATTTTGGAAACTGCTTGTGGGACACTTGGCCAGGTGAAAAATGAAAGCTCCCATCACACTCCAGATTCTTCTCTATGCTGCTGTGGTCCGAGGTTTCAAAACAGTGTCCAAGAGAGGCTCAGtGGACGACTGCACGGATTGGTCAGTGGACTACTTGAAATACAAAGTGCTTTTGGGGGAACCGGTGCGGATTAAATGTGCTTTATTCTATGGATACATCAGAGCGAACTACACCCACTCCCAGAGTGTGGGACTAAGCCTTATGTGGTATAAAAGTACAGGACACGGAGACTTTGAGGAGCCTATCTCTTTCGACGGCATCAGAATGAACAAGGAGGAGGACGCTATCTGGTTTAGACCCACCGAGCTCCAAGACGTTGGACACTATTCCTGTGTATTGAGGAATTCCACATATTGTATGAAAGTGTCCATGTCACTGACAGTGGCAGAGAACGACACAGACCTCTGCTACAACTCCAAAATGAGGTACTTCGAGAAGGCAGagttaagtaaaagtaaagatatcacCTGTCCGGACATTGAGGATTATGTACAGCCGGGGAAGGAGCCAGAGATAGTATGGTACAAGGAATGCAAGCCAAAGCAGTGGAGACAAAGCATTGTAAGGAGAAGAGATACTCTATCTATCCGGGAGGTGCGTGAAGATGACATTGGAAATTACACGTGTGAATTACAGTTTGGCAGCTTCGTGGTGAGAAGAACTACAGAACTATCTGTTACAGCCCCTCTGACAGACAAGCCTCCAAAGATCCTGTTCCCCTCAGAAAGCAAACTCAGCATCCTGGAGCTGCAGTTAGGAAGTCAAGTCAACCTGACGTGCCGAGCGTTCTTCGGCTTCGCCGGGGAAGTCAGTCCGCTCATCTactggatgaagggagagaagtTCATCGAAGACCTGGACGTGGAGAGGTTCAGAGAGAGTGACATcaaGCTTATCCGGGAGCACCTGGGAGAGCAGGAGGTGTCGATCACCCTGACCATTGACTCGGTGGAAGAGGCTGATCTAGGGAACTACTCTTGCTTCGTGGAGAATGGCAACGGCAGACGGCAGGCCAACATCCAGCTCACAAAGAGAGCAGAGCTTATGTACACAGTGGAGCTGGCGGGAGGCTTGGGGgccatcttgttgttgttgatctgcCTCGTGACCCTCTACAAGTGCTACAAGATGGAGCTCATGCTCTTCTACAGGAACCATTTTGGTAGCGAGGACATCGACGGAGATAATAAGGACTATGATGCCTATCTGTCATACACCAAAGTGGACCCGGACCAGTGGAGTCAGGAGACGCGTGAGGAAGAACGCTTCGCCCTGGAGATCCTACCCGACGTCCTGGAGAGGCATTATGGGTATAAACTGTTCATTCCAGACAGGGACTTGATCCCAACCGGAAcCTATATCGAGGACGTGGCGCGCTGTGTGGACCAATCCAAGCGCCTCATCATCGTCATGACACCCAATTATGTGGTGCGGCGGGGTTGGAGCATCTTCGAGCTGGAGACCCGCCTCCGGAACATGCTGGTCACCGGGGAGATCAAGGTGATTCTGATTGAGTGTGCCGAGCTGCATGGCATCATGAACTACCAGGAAGTGGAAGCGCTCAAACACACCATCAAGATGCTGACCGTCATCAAGTGGCGTGGCCCCAAGAGCAACAAGCTCAGCTCCAACTTCTGGAAACACTTGCAGTACGAGATGCCCTTCAAGCACATGGAGCCCATCATCAGCAATGAGCAGGTGCTGGACGTCAGTGAGCAGGGCCCTTTTGGCGAGCTCCAGACCGTCTCCGCCATCTCCATGGCAGCCGCCACCTCCACCGCCATGGCCACGGCGCACCCGGACTTGAGGAGCACCTTCCACAACTCCACTGTCAACTACCACACCCAGATGAGGCAGCAGAAACATTACTACCGCAGCTACGAGTACGACATGGCCCCCGGCGGcagcctgcctcccctctccaccctggGTAACCAGCACACCTACTGCAACATCCCTATGACTCTGATCAACGGACAGAGGCCCCACGGCCAGGCCAGGACACCCAGAGAACAGAGCATCGAGGAGGCACACGCCAATAACGCCATGCTACCGCTGCTGCCACGCGAGACCAGTATATCCAGTGTCATCTGGTGACAGCACCAGGCTGGCATAGGGACAGATGGGATATATTGTATGTAGAGGGAGAACTAGCTGGCagactgtgtggtggtggtggcggtggagGGGGTGTTGCTACGGAGACCGTTAGTGGACTAGAGACGGCTGCTGTGGAATTTGCACCAGGATTCACAGGGGGAAATCACCAACACAGGACACAAGTCATTCCGTCAGACTCAGACCACATTTGTTTGACAAGGACTAAGGAGGATTTGGCGTGAAAAGGAGAACCCGTTTGGTTTGAAATgcctgtacacacagacacaaacgccGATGTTCATTTACCCAGAAACTCAAGGAATACAGGGTCTtgtacatatattttatatttctttATAGCGTCAGTATTTTTCTCTTGTTTTTCTTTGACCTTTCATTCACCAGTTTTTATCATCAAATTTCTACGTCTGTTTTGATTTATGGTTTGAATTTGTTTGTATTTGGGTATGAAAGTGAAACGATGGTCTGTGAGGTCTGTTGGCTGAACTGTTGTAATTTTGAtctggacttgtagtg

Function

GO: NA

KEGG:

id description
K05170 IL1RAPL, IL1R8_9; interleukin 1 receptor accessory protein-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738972 lncRNA upstream 114095 13972760 ~ 13972963 (+) True G1518993
TU1738484 lncRNA upstream 114640 13971588 ~ 13972418 (+) True G1518612
TU1738486 lncRNA upstream 116168 13970547 ~ 13970890 (+) True G1518614
TU1738485 lncRNA upstream 117301 13969305 ~ 13969757 (+) True G1518613
TU1738422 lncRNA upstream 280365 13803381 ~ 13806693 (+) True G1518557
TU1739312 lncRNA downstream 1536 14487492 ~ 14487872 (+) True G1519303
TU1739076 lncRNA downstream 4506 14490462 ~ 14492116 (+) False G1519095
TU1739077 lncRNA downstream 4506 14490462 ~ 14492027 (+) True G1519095
TU1739313 lncRNA downstream 7923 14493879 ~ 14494081 (+) True G1519304
TU1739569 lncRNA downstream 9554 14495510 ~ 14495716 (+) True G1519534
XM_021570759.2 mRNA upstream 107171 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 107171 13975114 ~ 13979887 (+) True LOC110495485
XM_021570760.2 mRNA upstream 117869 13883956 ~ 13969189 (+) False LOC110495487
XM_021570761.2 mRNA upstream 117869 13957458 ~ 13969189 (+) True LOC110495487
XR_005037558.1 mRNA upstream 275770 13811236 ~ 13811288 (+) True LOC118941229
XM_036951916.1 mRNA downstream 71020 14556976 ~ 14558589 (+) False LOC110495481
XM_021570750.2 mRNA downstream 102695 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 102696 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 267480 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 267480 14753436 ~ 14764586 (+) True LOC110495457
TU1737133 other upstream 898978 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1144564 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1150780 12934654 ~ 12936278 (+) True G1517456
TU1736988 other upstream 1214895 12833651 ~ 12872163 (+) True G1517414
TU1736637 other upstream 2145953 11940062 ~ 11941105 (+) False G1517150
TU1739573 other downstream 12830 14498786 ~ 14499137 (+) True G1519538
TU1739660 other downstream 70370 14556326 ~ 14557346 (+) False LOC110495481
TU1739825 other downstream 328026 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 412300 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 723013 15208969 ~ 15216244 (+) False LOC110495440

Expression Profile