RNA id: XM_036951916.1


Basic Information

Item Value
RNA id XM_036951916.1
length 1614
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC110495481
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14556326 ~ 14558589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCTGGGCCTAAAGACACCCCAGCTTCAACACAATGCCCACTCTGCCCTCCTCCCCCCTTTCCACCTCTTtacccctgtcctcctcttccttccccctctccaatGCCACCTATCCCCcctttacctcctcctctccaaacCAGACCCTATGTAATCTAGATGACGGTGCCCTGCGCCTCCCCCTGGTCTTCTTCtactccctcttcttcctcctggGTCTGGTAGGTAATCTCCTGGCCCTGTGGGTCTTCGTCTTCCTCCACTCCAGGAGGAACTCTGTCCGGGTGTTCCTCATCAACGTGGCCATAGCTGACCTGGTGCTCCTGGCCTGCCTTCCCTTCAGAGTCCTCTACCATGCTAACGGCAACCGCTGGGTCCTCGGCCCCCTGGTCTGTAAAGTGGTGGGCAACCTCTTCTACATGAACATGTATATCAGTATCACTCTGCTGGGGTTCATTAGTCTGGATAGGTATGTGAAGCTGAAGGGGCGGGGCGGAGCGGGGAGGGGCCTGGCCAGGAGGCTGAGAGGTGGGGGATGGAGCTGGGTGGCGTGCAGGGCGCTCTGGGGGCTGTCCCTGGCGGCGGCCGTGCCCATGATCGCCATGTCGGAGGGAAACGAGGAACCTGGGAAGTGTTTCCAGTATAAGCAACGACGTGGGGCGAAGGGGAAGGCTTACTTCAACATGGCTCTGGTGCTGCTGTTCTGGGGGGTGCTCTGCCTGCTGGTGGTCTCCTATGGGAAGATAGCCATGCGCCTCCTCAAGGTGTCCAGGGATAAACCGGACCTCCCCAATGCCCACCGCTACGGTAGCGCCGCCAGGAAGTCCTTCTTCGTGCTATTCCTGTTCACCGTCTGCTTCGGGCCCTACCATGCCTTCCGCCCATTCTACGTCCTCTCCCAGCTCAGCCAATCCCCATCCTGCGATCACTTGCGCCTGGTGGACAGGACCaatgaggtcatgttgttgttctCCGCCTTCAACGCCGTCCTGGACCCTGTGATGTACTTCCTGTTGTCGGGCTCGGTGCGTAAGGCCGCCGTGAAAGCCCTCGGACAGAGCCTCGGCAACCAGCTCCACTTCCTTAACGACGGGACCTCCAACAGCTCGGTATCAGAGTTCAGACGGACCTCTCTGTCCGTTACCTCCcccaacactgtcattaaccccTCCCATGAGCCCAGGACCAGCCTCTGTCTGATTAGCCCCACCCTCCGCCCAGGCGCAGCCATAGTGCCAAAGCAGTGAATTTACAGACCTCATTGTTTAACTTCATGGACTTTAGCTCTATTTACATTATAATGTATACCATGTCCTCAACAACTGATGCATGTGACAAGGGACAATGTCTTGAACTAGACTCAGTTTCCAAGAATGGACCTGACCAGATGTCCTGAATCAAAGtgatacacactaccgttcaaaagtttggggtcacttagaaatgtccttgttctcgaaagaaaagcaattttctCAACGCAAAACCCCACTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAACGCAAAACCCCAGTCTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739633 lncRNA upstream 25139 14530073 ~ 14531837 (+) False G1519579
TU1739630 lncRNA upstream 25139 14530596 ~ 14531837 (+) True G1519579
TU1739628 lncRNA upstream 27266 14529089 ~ 14529710 (+) True G1519578
TU1739597 lncRNA upstream 29184 14527578 ~ 14527792 (+) True G1519562
TU1739596 lncRNA upstream 29968 14526738 ~ 14527008 (+) True G1519561
TU1739729 lncRNA downstream 113650 14672239 ~ 14675705 (+) True G1519654
TU1739837 lncRNA downstream 273570 14832159 ~ 14832358 (+) True G1519738
TU1739852 lncRNA downstream 334863 14893452 ~ 14897145 (+) True G1519750
TU1739888 lncRNA downstream 350902 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 353007 14911596 ~ 14921517 (+) False G1519751
XM_036951893.1 mRNA upstream 71020 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA upstream 71020 14087058 ~ 14485956 (+) True LOC110495483
XM_021570759.2 mRNA upstream 577089 13975110 ~ 13979887 (+) False LOC110495485
XM_021570758.2 mRNA upstream 577089 13975114 ~ 13979887 (+) True LOC110495485
XM_021570760.2 mRNA upstream 587787 13883956 ~ 13969189 (+) False LOC110495487
XM_021570750.2 mRNA downstream 30062 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA downstream 30063 14588652 ~ 14643860 (+) True LOC110495476
XM_021570729.2 mRNA downstream 194847 14753436 ~ 14760689 (+) False LOC110495457
XM_021570731.2 mRNA downstream 194847 14753436 ~ 14764586 (+) True LOC110495457
XM_021572929.2 mRNA downstream 220501 14779090 ~ 14780827 (+) True LOC110496915
TU1739573 other upstream 57839 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 120856 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1368896 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1614482 12937523 ~ 12942494 (+) True G1517457
TU1737033 other upstream 1620698 12934654 ~ 12936278 (+) True G1517456
TU1739825 other downstream 255393 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 339667 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 650380 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 1197904 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 1237763 15796352 ~ 15799881 (+) True LOC110495644

Expression Profile