RNA id: XM_021570729.2


Basic Information

Item Value
RNA id XM_021570729.2
length 2841
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110495457
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14753436 ~ 14764586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAAATGTTTTATTGACGTAATAACGGAGTGCCCAGAGACTTCCGGAGACTTTCACACATGTGAAAAAAACATGGGGACACTATTTAGATGTTTTTCTCTATAGCTCGTATTTGTTCTTCGGTCAGCACCAAGAAATAACAATCTTTAGCGTTTTCTGTGATTGACTTAACATATTTTCTTAACCTGTTTTCAACATTTGTCGCGTTAGCAAACTTTTCAGCTCTCAAGTTAGGCAGCTAATTTAAGTTAGCCACCTTGGTAACATCTAGCTAGCTATCATGGATTACTCGGACGAAAATTCGGTACAATTCCACGGGGATGAAGAGATTATAGAAGTCATCGACCTTAACGAAACAGAGCAAAACCCAGATGATTTGGCGGATGAGTTCGAGGACGTGGACGTCGGAGAGACTGAGGACGGAGACGATGAACAGGAAGACTGGGATACCGACGACGAGATGGAGCAGGAAAAGGAGCAAGATGACAGCGAACTCACCTTTTCCAAACACACAGGCTCCGTGTTCTGTGTGAGTCTGGACCCAGCCACAAACAGCTTGGCTGTGACCGGAGGAGAGGATGACAAGGCCTATGTCTGGAGAGTGAGTGATGgggaagtgctgtttgaatgtaCAGGCCATAAGGACTCCGTGACAAGTGTTTTATTCAGCCATGATTCTTCCCTGGTGGCCACGGGGGACATGAGCGGGCTGatcaaggtctggaaggtggagACCAAGCAGGAGGTGTGGTCCTTCGAGGTGGGAGACCTGGAGtggatGGAGTGGCACCCCTGCGCCCCGGTGCTGCTGGCGGGCATGGCGGACGGTAACGTTTGGATGTGGAAGATCCCAGGGGGTGACTGTAAGACCCTGCAGGGCCCTGGTTGCCAGTCGACCAGTGGAAAGGTCCTGCCAGACGGGAAGAGAGCTGTGGTGGGCTATGAAGATGGCAACGTACGACTTTGGGACCTCAAGCAGGGAAATGCCACCCATGTGATTAAAGGTCATGATGGACACCAGGGGGCGCTGACGTGCCTGGCCTGTAACAAGGACGGCTCTCTGGTGCTGACGGGCTCCGTGGACGGCCGTGCCAAGCTCATCAACACTGCCACTGGCAAGTCTGCTGTCTCCGGCTCCACACCTACCCCCGCCCTGCCAGGTGGGAAGTCTGTGACAAAGAAGCGGAGGTGGGGAAGAGCGAAACCTGCAATCGGAGAGGAGGAGGGTCGTTGGCACTCTGTGCTGGAGGAGGATGTGTTGCCTACACCTCCAGTATTCAGACCAATAAGGCCATCAGGACCTCAGCTGGACATGACCTCTAAGTACAGCCCCATGCAACTTTTTCAGCTGTTTTTCACCTCGGCAGTTGTTGATTCCCTGGTGTCGAACACAAATAAGTATGGTGCTAAGAAGCAGGCAGGcaagaaagagggatggaagcCCATTTCCATGTCAGATCTTTTTTGTTTCATGTCAATGGTCATGTACATGGGTCTTGTGAAGCTAAAAACCCTGAAAGACTACTGGAAAACTGCTCCCCTCTATCAACTGCCTTTCCCCTCCACTGTCATATCATGCAAAAGGTTTCTGACAATCTCACGGGCGCTTCATAtcagtgacccagaagttgaTGAGGACAATGAGAAGATGAGAAGCACAGCAAGGTTTGATAGGCTGTGCAAAATAAAACCTCTCTACCCCAGCATCGTTGAGGCTTGCAAAACCTATTTTCAGCCTGCCCAGAACGTTTCCAtcgatgagaggatggtagcTTCAAAGGCCAGAATTGGCCTAAAACAATACATGCGTAACAAACCAACTAAATGGGGTTACAAGctgtttgttttggctgattctGTGTGTGCATACACGTGTAATTTATTTGTTTATGAGGGGAAGAGCAGTGTTGCGACCGGTAAGGGATTAGCTATGACTCTGTTATGCAGTTATTAGATTTTCAACTGCTggggaagggctacaaactgtttgtggaCAACTTTTAAACAAGCCCTACCCTGTTTGCAGACCTGAGGAAGCGGGATGtgtgggcttgtggcaccattcggACCAACAGAGTGGGCTTTCCAAAGACAAAGGTGAACGACATGCCTAAGCGATGGATCCGTGAAGATGGCCTGCTCTTTGTGAAGTGGATGGATACCAGAGAGGTGGTCATGTGCTCCActatccacaagtccttcagtggcGATCATGTCGTCAGGCGTGTGAAGGACGCTACAGGGGCATGGACCacaaaaaatgtccccattcctgCAGCCAtcaaggactacaacaagagcatgggaggtgtggacctgtcagatgcACTGATTGGCTACTACAATGTTCTCCACAAGGcaatgaaatggtacaagacatttttctatcatttcattgacattgctgtggtgaatgccttcatcctccagaaggaaatggctaagagctgtggacagccccccatctcacagctagccttcagggagctgctcatccatgtcctctacctctgtcccttctacccctgtcccctctacctctgtcccttctgctccaaccAGTTGTGTTCACCTGCCCCAGATTCATCTCTGCAGGCATGATTGTGCCTCGGGGCAAAAAGGGCACAGTAGGGAGacgtcgttgtgttctgtgtcacaggaaatgccccatcacctgcaccagcTGTTCAGtaaccctctgctttacagcagaaagagagtgCTATTGGGCATGGCATCAGAAACACAATATtttgtagaggactgagggtcttcacaatattgtacattatacattgaatgtgtgtaaatagttacccttgttattttacattttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739729 lncRNA upstream 77731 14672239 ~ 14675705 (+) True G1519654
TU1739661 lncRNA upstream 196313 14556326 ~ 14557123 (+) True LOC110495481
TU1739633 lncRNA upstream 221599 14530073 ~ 14531837 (+) False G1519579
TU1739630 lncRNA upstream 221599 14530596 ~ 14531837 (+) True G1519579
TU1739628 lncRNA upstream 223726 14529089 ~ 14529710 (+) True G1519578
TU1739837 lncRNA downstream 71470 14832159 ~ 14832358 (+) True G1519738
TU1739852 lncRNA downstream 132763 14893452 ~ 14897145 (+) True G1519750
TU1739888 lncRNA downstream 148802 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 150907 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA downstream 151942 14912631 ~ 14921517 (+) True G1519751
XM_021570750.2 mRNA upstream 109576 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA upstream 109576 14588652 ~ 14643860 (+) True LOC110495476
XM_036951916.1 mRNA upstream 194847 14556976 ~ 14558589 (+) False LOC110495481
XM_036951893.1 mRNA upstream 267480 14087058 ~ 14485956 (+) False LOC110495483
XM_036951894.1 mRNA upstream 267480 14087058 ~ 14485956 (+) True LOC110495483
XM_021572929.2 mRNA downstream 18401 14779090 ~ 14780827 (+) True LOC110496915
XM_021570724.2 mRNA downstream 32248 14792937 ~ 14799311 (+) False zgc:92380
XM_021570725.2 mRNA downstream 32543 14793232 ~ 14799311 (+) True zgc:92380
XM_021570722.2 mRNA downstream 74705 14835394 ~ 14842885 (+) True LOC110495453
XM_036951919.1 mRNA downstream 98033 14858722 ~ 14861844 (+) True LOC118941101
TU1739660 other upstream 196090 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 254299 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 317316 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1565356 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1810942 12937523 ~ 12942494 (+) True G1517457
TU1739825 other downstream 53293 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 137567 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 448280 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 995804 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 1035663 15796352 ~ 15799881 (+) True LOC110495644

Expression Profile