RNA id: XM_021572929.2


Basic Information

Item Value
RNA id XM_021572929.2
length 1738
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC110496915
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14779090 ~ 14780827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaatcaatttgatttgatttggtctctAGACCAGAGAGCATTTTGCGTTTACATTTACATGTCGGTCATTTAGCCaacattcttatccagagcgactaacAGGCAGTTTGTTTTTGAGCTCTGAATATATCATGCTCCATGACCTCTGGTCTCactgtattctgtctgtctgtcttcacccAGGCTTCCTGCAGTTTAATGGGAGCTGTGGAAGTCTCCGTAGCAGTGGGGGCAAAGGTCTGGCACGCTAAGGACAACTGTGGAGGAACACAACCACCGCAACCGCAGCCATGGATGACCTGGCTAATGACTCTGCTGTGCGGCCGCTGCTGTCGGAGGCACGTCTCATCTACGCCATCACCGTGCCCCTGTCCACCGCCATCATCCTGGCCAACCTGGTCATCATCCTGGGCATCTCCTGTAACCGTCAGCTCTACAACACCCCAAACTACTTCTTCCTGAGCCTGCTAGTGGCTGACCTGTGTACGGGCGTGGCCCTACCGTTCATCCCCTGGATGGGACTCAACCGTTCACTGAGTTTTAGCTCCTGTCTCCTGGTTCATATTTTTCCTAATTTCTTGTTCCTGGCGTTCCTGTTTAACCTGGTGATAGTTCATTATGAGAGATACATGTGCATCATGAGTCCGTTACATTATAGTAGCTTCTGGGTTCACCGCCACTTCCCGCTGGTGCTGCTCGCCGTGTGGGTGCCGCCACTGCTCTACGCCTCCCTGCCCGCCTTCGGCTGGAACAACCGGGCCGGCCCAGGGTGGAACGGCTGCTGCTCGTTTAACGACACGGGCACGCTGGGTGCGCCGGTGAACTGTTCCACCGTGGTGGTAGCGGCGCCGGGCGGCTCCGAGTGCTGTTCTTACAGACGGGTCTTCCCCAACGCCTTCATCTACCTTGAGGTGTACGGGCTGCTGGCGCCTGCCATCCTGTCCATCGCGGGCATGACGGGACGTGTGCTGTGGATCACCCGGGGCCAGATGAAGGACATCTGCCGGCTGCACCGCTCCGTGGCGACCAGGGGGGGCGGTCAGGCCTCGGAACGGGAGCAGCGGCTCAACCTCCGCTACACGCGGTGCGTGGCTGCCGTGTCGCTGACCTTCCTGGCCTGCTGGGTGCCCTACATCATCTACATACACGTCTCCGTGGTGTTTCTGCTCAGCAAGGAGACGCGCGGGAACTCCACCACACACATCGTGCTGTCGTGCACGGGGATCGGGAGCATGGCAGTGATgccgctggtcctggggctggccaACAGGCAGTACACGGACCCGGTGAGGAAACTCCTCCATAAACTCCGagacagatggaggaggagacaggattcTGAGGATATGGCTCTCTGAGTAGCTAGGACAGGACTGCTCTCACTTTGGGGATGGACGTGTGGGATTATAAATGGGGATTATAGCATATGGATGATGAAGCATCCTCTACTCCTGGATGAGGGCAGTGGCGCCCCGAGTCTGTGGACTCTAGCTGTAAGGGAGTAGCAGAAAGACCCCATTCGAGGTGCAGGACTGGTAGGGTTGCCCCACCTCTCCCATGTCTGTCAGTTTATAGTCACAGCATGTGTGACTCTTGCCATTGGGGCCATTGAGCGCGTTATGTTTAAATCCATCAGTATACATGTGTACACTACTTGGGTAGTCATAATAAATTCAAAACAAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08400 GPBAR1; G protein-coupled bile acid receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739729 lncRNA upstream 103385 14672239 ~ 14675705 (+) True G1519654
TU1739661 lncRNA upstream 221967 14556326 ~ 14557123 (+) True LOC110495481
TU1739633 lncRNA upstream 247253 14530073 ~ 14531837 (+) False G1519579
TU1739630 lncRNA upstream 247253 14530596 ~ 14531837 (+) True G1519579
TU1739628 lncRNA upstream 249380 14529089 ~ 14529710 (+) True G1519578
TU1739837 lncRNA downstream 51332 14832159 ~ 14832358 (+) True G1519738
TU1739852 lncRNA downstream 112625 14893452 ~ 14897145 (+) True G1519750
TU1739888 lncRNA downstream 128664 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 130769 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA downstream 131804 14912631 ~ 14921517 (+) True G1519751
XM_021570731.2 mRNA upstream 14504 14753436 ~ 14764586 (+) True LOC110495457
XM_021570729.2 mRNA upstream 18401 14753436 ~ 14760689 (+) False LOC110495457
XM_021570750.2 mRNA upstream 135230 14588651 ~ 14643860 (+) False LOC110495476
XM_021570751.2 mRNA upstream 135230 14588652 ~ 14643860 (+) True LOC110495476
XM_036951916.1 mRNA upstream 220501 14556976 ~ 14558589 (+) False LOC110495481
XM_021570724.2 mRNA downstream 12110 14792937 ~ 14799311 (+) False zgc:92380
XM_021570725.2 mRNA downstream 12405 14793232 ~ 14799311 (+) True zgc:92380
XM_021570722.2 mRNA downstream 54567 14835394 ~ 14842885 (+) True LOC110495453
XM_036951919.1 mRNA downstream 77895 14858722 ~ 14861844 (+) True LOC118941101
XM_036951920.1 mRNA downstream 96865 14877692 ~ 14880867 (+) True LOC118936566
TU1739660 other upstream 221744 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 279953 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 342970 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1591010 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1836596 12937523 ~ 12942494 (+) True G1517457
TU1739825 other downstream 33155 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 117429 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 428142 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 975666 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 1015525 15796352 ~ 15799881 (+) True LOC110495644

Expression Profile