RNA id: XM_021570725.2


Basic Information

Item Value
RNA id XM_021570725.2
length 1624
RNA type mRNA
GC content 0.51
exon number 7
gene id zgc:92380
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14792937 ~ 14799311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTGcctctctattttctttctcaaCTACTGCCATGTCTAGGAACAGTGCCTTCAGCATGTTCGGTGGGGCCGGGGGAAGAGGCTCCAGGGTGTCTGTGGCCAGTCTGGAGGGGCTACGGAACGCGATGCGCTCTGACCCGGAGAATTCGAAGGAGGTCTCTCCTGCCCCCGGGCCCGCCCCGGATGATAAGAAGACCATGAAGGGTCTCAACGACCGTCTGTCCGGCTACCTGGGCAGGGTGAGGAACCTAGAGGAAGCCAACAAAGATCTGCAGGACCAGATTCAGGACATCTTGGACAAGAGAGGAGACCCCAACGGCCGCGACTGGGATGTGGTTGAGAAACCATTGAATGACCTCAGGAAGAAGCTCCGTGACATGACCATGGATAATGCACGTTTGTTACTGCAAATGGACAACACCAAACTGGCCAATGATGACTTCAAAAACAAGCTGGACAACGAGAAGCAGGCCAGGAAGACTGTGGAGAAGGACCTGATTGGTCTGAAGAAGGTGATGGACGACATCAACCTGAACCGCATGCAGCTGGAGAGCCAGAtcgagtctgtgaaggaagagcTCGCCTTCCTCAAGAAGGACCATAAGGATGACGTTGATGAGCTGCGTAAGAAGATCAAGGACTCCAACGTCCTCGTGGAGTTTGACTCACAGGACAACAACCTGAGTGACACACTCAACAAGATCCGCTCCCAGTACGAGAAACTGGCCAAGAAGAACCTCAAGGATACCGACGACTGGTACCAGAGCAAGtttGACAGCATCAAGGTAGAGGTGGTTGAGAATAATGAGGCTCTGCATTCAGGCAAGAATGAGCTCAAAGACCTGCGCAGACAGAGACACCTTCTGGAGATAGACATACAGTCTACAATGAGCATGGTCCACTCCCACGAGGAATCTCTGAAGGACATGGATGGGCGGTACAACCGTGAGATGACTCGCCTCAATAAGATCCTGCTGCAGTTGGAGGGAGAGCTGGTCCAAGTGAGGACGCAGGTGGAGAGGCATGTGGATGACTACCAGGAGCTGCTTCACGTCAAGATGAAGCTGGAAGCCGAGATCGAGAACTACCGCAGCCTAATGCACGACATCGCCCCCGACGACAGAGCCGCCCCAGCCACCTAAGAAAGCCTTGATGAAGGATGAGGTTGATGGAAAGGAGGTCCCCAAAAAGACAGAAGCTGCGGCAACTCAGAAAAGTTTCCCTCCAATCCAAGAGGCCCCCACAAAGAAGACCGAAGCCCCTGCAACTCAAGAGAGCCTCCCTAAAAAGACAGAGGCGTCTACAAAGGCAGCTAAGGCTAAGACACCAACAACCGAAGCAGGCACCAGCTGAGGATAAACCAAAGAAAGATTCCACCTCTTGTGTCTTCTTCCTCCTCCGATGCAGACAATAATGACCATAAAGAGAAACCCACAAATAAGTCTGCCCCCTGAATCCCCCTCCTCACCTCAACCCCGATCCCTCTAGTCTTTTCTCTTTGTGTTTTGAAGCCCAGCATCGTAACTAATGATGTTGTGTACAGTTTGAAGTAGATTTGGTGTTATTCCACTGCGTTCTTTCTCAGATGTTTCTCTACAAAATAAATACGTTCAACACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739729 lncRNA upstream 117527 14672239 ~ 14675705 (+) True G1519654
TU1739661 lncRNA upstream 236109 14556326 ~ 14557123 (+) True LOC110495481
TU1739633 lncRNA upstream 261395 14530073 ~ 14531837 (+) False G1519579
TU1739630 lncRNA upstream 261395 14530596 ~ 14531837 (+) True G1519579
TU1739628 lncRNA upstream 263522 14529089 ~ 14529710 (+) True G1519578
TU1739837 lncRNA downstream 32848 14832159 ~ 14832358 (+) True G1519738
TU1739852 lncRNA downstream 94141 14893452 ~ 14897145 (+) True G1519750
TU1739888 lncRNA downstream 110180 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 112285 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA downstream 113320 14912631 ~ 14921517 (+) True G1519751
XM_021572929.2 mRNA upstream 12405 14779090 ~ 14780827 (+) True LOC110496915
XM_021570731.2 mRNA upstream 28646 14753436 ~ 14764586 (+) True LOC110495457
XM_021570729.2 mRNA upstream 32543 14753436 ~ 14760689 (+) False LOC110495457
XM_021570750.2 mRNA upstream 149372 14588651 ~ 14643860 (+) False LOC110495476
XM_021570722.2 mRNA downstream 36083 14835394 ~ 14842885 (+) True LOC110495453
XM_036951919.1 mRNA downstream 59411 14858722 ~ 14861844 (+) True LOC118941101
XM_036951920.1 mRNA downstream 78381 14877692 ~ 14880867 (+) True LOC118936566
XM_036951026.1 mRNA downstream 98843 14898154 ~ 14901354 (+) False il8r
NM_001124279.1 mRNA downstream 99137 14898448 ~ 14901353 (+) False il8r
TU1739660 other upstream 235886 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 294095 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 357112 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1605152 13187101 ~ 13188080 (+) True G1517545
TU1737034 other upstream 1850738 12937523 ~ 12942494 (+) True G1517457
TU1739825 other downstream 14671 14813982 ~ 14814886 (+) True G1519733
TU1739843 other downstream 98945 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 409658 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 957182 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 997041 15796352 ~ 15799881 (+) True LOC110495644

Expression Profile