RNA id: XM_036951920.1


Basic Information

Item Value
RNA id XM_036951920.1
length 1956
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC118936566
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14877692 ~ 14880867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tTACGTCTATCTTGCCAGTTTAGAGTATATcctgctagctgaatatccatgtcgtcattcagccacgattccgtgaaacagaggaTATGACAGTTTTTGAAgacccgttggtaggatattcgtgattgtacttcgtctaatttattgtccaatgattgcacgttggtgaGTAGTATTAACGGtgacggcagctttcccactcgccttatccgggtcctgaccaggcatccggttctttgtcctctgtaccagcgtcgcttcctcttgcaaataacgggggTGTTAGGAGAATGTCTTGTGCGCCCTCCTTGTAGAAAAAATATTTGTCTAACcagaggtgagtgatcgctgtcctgatatccagaagctcttcgTGTAATcagagGATGTCTTGACACTTCCATCCCAGCTGTGATGTCTTTAAAACAGTGGCAATTCTCTCTTCATTATCATAGAGCTGGATGCAAAGATGACAGAGGTCCTGGACTATGATTATAAATCAGACTATGACTATAAATCAGCCAATGACTCCTATTACTTCAACATCACCTCCTTTGACCTGAACTTTAACACATTGTCCTGTGCAGCTCAGCCCCTTTCTCCCGGTGCCGTCATATTCCTGTGTGTTCTTCACGTCGCCATCTTCCTATTGGCTGTTCTTGGTAACCTACTTGTGGGGCTCGTGATTGGCTTCAGTCAACAGTCCCTGACCCCATCCGACGTCTACCTGTTTCACCTGACTGTAGCTGACGGGCTGCTGGCTCTGACCCTGCCCTTCTGGGCTGCTAACACGCTCCACGGCTGGATCTTTGGTGACTTCCTGTGTAAGTTCCTCAGCCTGGTTATGGAGGCTAGCTTCTACACCAGCATCCTGTTCCTGGTGTGTATCAGTGTCGACCGCTACCTGGTGATCGTTCGCCCAGCCAAGTCCCGTAAGGGCCACCGAAGGGCCTGCAGATGGTACGCCTGCACCTTCATCTGGACTCTGGGGggcgccctctctctccctgccctcttcAACAACGCTTTCACGCCCCAGAGAGGTGGTCCGACGAGGTGTGCTGAGCACTTCGACGTCAGCAGCGCCACCCACTGGCGGCTCGCTACTCGCGGCCTACGCCACATCCTAGGGTTCCTGCTCCCACTAGTCATCATGGTGGCGTTCTACAGCATCACCGTGGCCCGGTTGCTGCAGACGCACGGCTTCCAGAAGCACAGGGCCATGCGGGTCATCATTGCCGTGGTGTTCGCCTTCTTCCTGTGCTGGACGCCGTTACACATGACGGTGATGGCCGACACCCTGATGAGGGCCAAGTTGGTGCGCTTCGACTGTGCTGTGAGGAACAGGGTGGACCTGGCCCTCCAGGTCACCCACAGCCTGGCCCTGGTCCACAGCTTTGTTAACCCAGTGCTGTATGCCTTCGTGGGGGAGAAGTTCAGGGGGAACCTGGGTGCCCTGGTCAGGAAGTCACGAGGACCAGAGAGGGGGTCGTCGTCTCGATTTAGCAGGTCCACATCCCAGACCTCAGAAGGGAATGGACTGTTATGATTGATCTGACAGGTTGTCCCCACATTACTTtgaatcagggttggggtcaattccatttcaattccactCAATTCAGGAAGCACTCTAAAATTCAAATTccaatgcttttcaatgaggacattttttaaatcaaaatttGGTTCACTTTCTGaactgactggaattgaaatggaattaatTCCAAACCTGCTTTGAATAATGTATAAGATTGTCCCTTTGTAACGTATTGTAACCTAACATTCCTTGCCTGACATTGAATATGTGCTGGCACTATCAGGCTGCAGACTCAGATCCTGTATGTATGTGATCTTTAATGTCCCTCCATATACTAATGCCCCTGGTGTCTGTACATGTATATAATGCCCTCTGTTGTCTGTTGTATTAGGTAATAAATACCCTGTACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739837 lncRNA upstream 45334 14832159 ~ 14832358 (+) True G1519738
TU1739729 lncRNA upstream 201987 14672239 ~ 14675705 (+) True G1519654
TU1739661 lncRNA upstream 320569 14556326 ~ 14557123 (+) True LOC110495481
TU1739633 lncRNA upstream 345855 14530073 ~ 14531837 (+) False G1519579
TU1739852 lncRNA downstream 12585 14893452 ~ 14897145 (+) True G1519750
TU1739888 lncRNA downstream 28624 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 30729 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA downstream 31764 14912631 ~ 14921517 (+) True G1519751
TU1739870 lncRNA downstream 37838 14918705 ~ 14919404 (+) True G1519752
XM_036951919.1 mRNA upstream 15848 14858722 ~ 14861844 (+) True LOC118941101
XM_021570722.2 mRNA upstream 34807 14835394 ~ 14842885 (+) True LOC110495453
XM_021570724.2 mRNA upstream 78381 14792937 ~ 14799311 (+) False zgc:92380
XM_021570725.2 mRNA upstream 78381 14793232 ~ 14799311 (+) True zgc:92380
XM_021572929.2 mRNA upstream 96865 14779090 ~ 14780827 (+) True LOC110496915
XM_036951026.1 mRNA downstream 17287 14898154 ~ 14901354 (+) False il8r
NM_001124279.1 mRNA downstream 17581 14898448 ~ 14901353 (+) False il8r
XM_036951922.1 mRNA downstream 27087 14907954 ~ 15133334 (+) False LOC110495438
XM_036951925.1 mRNA downstream 27087 14907954 ~ 15133334 (+) False LOC110495438
XM_036951926.1 mRNA downstream 27087 14907954 ~ 15133334 (+) False LOC110495438
TU1739825 other upstream 62806 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 320346 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 378555 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 441572 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1689612 13187101 ~ 13188080 (+) True G1517545
TU1739843 other downstream 17389 14898256 ~ 14900172 (+) True il8r
TU1740022 other downstream 328102 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 875626 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 915485 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 1038290 15919157 ~ 15922899 (+) True G1520742

Expression Profile