RNA id: TU1739843



Basic Information


Item Value
RNA id TU1739843
length 692
RNA type TUCP
GC content 0.48
exon number 3
gene id il8r
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14898154 ~ 14901354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaTATGACAGTTTTTGAAgacccgttggtaggatattcgtgattgtacttcgtctaatttattgtccaatgattgcacgttggtgaGTAGTATTAACGGTGACGggagctttcccactcgccttatccgggtcctgaccaggcatccggttctttgtcctctgtaccagcgtcgcttcctcttgcaaataacgggggTGTTAGGAGAATGTCTTGTGCGCCCTCCTTGTAGAAAAAATATTTGTCTAACcagaggtgagtgatcgctgtcctgatatccagaagctcttcgTGTAATcagagGATGTCTTGACACTTCCATCCCAGCTGTGATGTCTTTAAAACAGTGGCAATTCTCTCTTCATTATCATAGAGCTGGATGCAAAGATGACAGAGGTCCTGGACTATGATTATAAATCAGACTATGACTATAAATCAGCCAATGACTCCTATTACTTCAACATCACCTCCTTTGACCTGAACTTTAACACATTATCCTGTGCAGCTCAGCCCCTTTCTCCCGGTGCCGTCATATTCCTGTGTGTCCTTCACGTCGCCATCTTCCTATTGGCTGTTCCTGGTAACCTACTTGTGGGGCTCGTGATTGGCTTCAGTCAACAGTCCCTGACCCCATCCGACGTCTACCTGTTTCACCTGACTGTAGCTGACGGGCTGCTGGCTCTGACCCTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1739852 lncRNA upstream 1111 14893452 ~ 14897145 (+) True G1519750
TU1739837 lncRNA upstream 65898 14832159 ~ 14832358 (+) True G1519738
TU1739729 lncRNA upstream 222551 14672239 ~ 14675705 (+) True G1519654
TU1739661 lncRNA upstream 341133 14556326 ~ 14557123 (+) True LOC110495481
TU1739633 lncRNA upstream 366419 14530073 ~ 14531837 (+) False G1519579
TU1739888 lncRNA downstream 9319 14909491 ~ 14909694 (+) True G1519759
TU1739856 lncRNA downstream 11424 14911596 ~ 14921517 (+) False G1519751
TU1739855 lncRNA downstream 12459 14912631 ~ 14921517 (+) True G1519751
TU1739870 lncRNA downstream 18533 14918705 ~ 14919404 (+) True G1519752
TU1739895 lncRNA downstream 30655 14930827 ~ 14931038 (+) True G1519766
XM_036951920.1 mRNA upstream 17389 14877692 ~ 14880867 (+) True LOC118936566
XM_036951919.1 mRNA upstream 36412 14858722 ~ 14861844 (+) True LOC118941101
XM_021570722.2 mRNA upstream 55371 14835394 ~ 14842885 (+) True LOC110495453
XM_021570724.2 mRNA upstream 98945 14792937 ~ 14799311 (+) False zgc:92380
XM_021570725.2 mRNA upstream 98945 14793232 ~ 14799311 (+) True zgc:92380
XM_036951922.1 mRNA downstream 7782 14907954 ~ 15133334 (+) False LOC110495438
XM_036951925.1 mRNA downstream 7782 14907954 ~ 15133334 (+) False LOC110495438
XM_036951926.1 mRNA downstream 7782 14907954 ~ 15133334 (+) False LOC110495438
XM_036951928.1 mRNA downstream 7783 14907955 ~ 15133334 (+) False LOC110495438
XM_036951927.1 mRNA downstream 43928 14944100 ~ 15133334 (+) False LOC110495438
TU1739825 other upstream 83370 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 340910 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 399119 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 462136 14434762 ~ 14436120 (+) True G1519096
TU1737133 other upstream 1710176 13187101 ~ 13188080 (+) True G1517545
TU1740022 other downstream 308797 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 856321 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 896180 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 1018985 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 1038058 15938230 ~ 15938818 (+) False G1520748

Expression Profile