RNA id: XM_021570672.2


Basic Information

Item Value
RNA id XM_021570672.2
length 3084
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110495435
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15176401 ~ 15186345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCATCAACGTCGTTTGACATATAGCCATCGTTACAGGATTCGCCTCTGGCAGTTTTTAAAAAGGCAAGCTCAAAGCCACATATTATACTGTATGTGCAGAAAACGTGCGGGGAGGACAGCCTACAGAGATTGGTTCTTCTACAAGACAATCCttgctttttttcttcttcatttggAGACAATTGATGTGCATGCGTAAAACGACATTTGAAAGCCCAAAAGGAGAAGACTCGGGTTATTACTCGGTGGACAATCTAAACTCGAATATAATTGGACATTTGACACAATAAAGACAACGCAGACACTTCGCCCGGGTGAAGAGTGGAACCTTAGCATCTGACACAGTGATTCAGGGACTTTTACGCACTCAGGCAGTGGCCACCTGTGGATGGTGACTCTTTCAAGGACTTTTGCCCCAAAACCCCAATGATCGAAAGCATTGCAAGCGTTCCATGCAGTACACATAGTAGTTGATTATAGTTGTTTTATGTTTGTAATCATTTTAATTTGAAACAATATGCTGGTTAGTTTTTCACTCCTGGCAACGCTTCTCCTAAGCGAGTCGGGTTGTTTGGGCTCGTTCGTACCGTGCGAACCGTGTGACCAGAAGGTAATGTCGATGTGTCCGCCAGTGCCGGTGGGATGCCAGCTGGTGAAGGAGCCTGGCTGTGGTTGCTGCCTGACTTGCGCGCTCCCGGAGGGACAGTCTTGCGGGGTGTACACGGGGACTTGCACGCACGGGCTCCGATGCCTGCCGAAGAGCGGGGAGGAGAAACCGCTGCACGCGCTCCTCCACGGGAGAGGAGTGTGCGCCAACGAGAAGATATACAAGCCGCTGCATCCAGGCAGGGACGAAGCTATGTTAGCAGAGGTTCCAGAGTCCCTGCTGCCCCAGGCCAAGGTGCCTCTTTACGGGGGCAGAGACCACATCAGCAGCCGCAAGGCTCAGGCCATGAGACAGGCTAAAGACCGCAAGAGACAGCAGGCCAAGCTCCACTCTGTCAGCAGCCTTGACTACTCAACCCTCGCCCTGGACAAACTGCAGCCTGAGTTTGGACCCTGCAGGAGAAAGCTGGACGGGATCATTCAGAGGATGAAAAACACATCTAGAGTCCTAGCTCTGTCCCTATACCTTCCCAACTGTGACAAGAAGGGATTCTTCAAGCACAAGCAGTGTAAACCATCACGTGGGCGGAAGCGGGGGATCTGTTGGTGTGTGGACCGTTTTGGTGTGCAGCTCCCTGGCACGGACTACAGTGGAGTGGACATCCAGTGCAAAGACCCGGAGAGCAACAGCAACAAAAACGAATGAGAGATGGCCAATTTGGTCACCTGACATGAGCCAAGGCCCGCCTCCCTTTACCCCTACTCCTGCAAATCACATGTACATGCAAAATATGCAAAAGCCAATCAAATCAGGAAAGCAGAGcacagatacagtacatacacatggTTTTAAACTACACATCTACCTATACTGAGATGACCTATAACCTCCCTTTGAAGCACATATAACAATGTTCTCTGATTTAAATTATATTAGATTCTGTTTAAACAAAATTTTAAGGCTAAAGAGTAAAGCTAATCTTTTTCACCTATGTTGTTATCGTGATGTTGACAGGAACTCTTTACTGGGGAGCACAGTAATCTGGGGTCGTATTTAAACGTAACTCTGTTCCCTTGGTCCAAATGTTTGTCCCTTCAGAGCACTTCCCTACAAGAGAACCTCAGCGACTGAAAGTACTTTATTGTCTGAGTGTGGGTCTATGTCCTTATATGTCTTTCTGAGTGCGATGAGATGAGCTTTTTTCAGTCCTGCCTTTCTTCCACTTTGTCTCCCAGATTGTTCTGAGTTGAGGGTCTTAAGAACTAGGAACTGCTCGTATACAGTAGGTTGTTACAGAGTAGTTACAGTAGCTATCTTAATAAACCCATCAACTGCTACTTCTGATGGATGTCTCAATATAGTTTCATGGGGTGACTGTATGAaatgactatgtgtgtgtgtgtgtgcctcctaTACTTTCTCCTTTAGTAGTCTGtatgatataaaaaaaaaagatcacCTCAAAAACACATCATGACAGTCATTTGCTTGTTTTGTCGTTTATAAACGACAGCCAAGAAAGTACAGGTGCTTTGAAAAGTCCAACACAGGCTCAAATCGCATGCAAATGCTGCACAGCGTTTCTATTGACTTCTCGTAGCCTCCTGTCTGACCACAACACAGTCTAGGACTCTACTATATGACCCCTGGAAAGGTGTGGCTCTTTGGGTTTCTATGGAAATCTCagtgccttctctctctctcatgacttTGAATCCAGATTTACATCCAGATTATCAGGCCTTGTCGTTGAACGAGGACATTTTAGCAGTATGTGGATGTGGAGATTGGTTGCCCGAGACCCATGAGTTGACGAGTGTGAAGATATAAGTCTCCACGATATAAGGCCGTGATGATACTTCTTGATCCTACGTCCCGTGTGTGAACATGATGTTAAATCAGACGTCAACTGATTTTATTGAAGCTCAAAACATTTGCCAGATATTTTGTTGACATTCCTTGAAATAGACATCCCTTTTTTCAGGGTATGGTAACATGCCGATAGCTTTGACAGGGGCTGTGTGTACAGCCTATGCCTGCCACTAGAATGCATAGGAGACTTGGAAAGCTTTCTCAACTCAGTCTTAAGCTTGCTTGTATGAAAGACCATGAAATCTCAAACATTCCATATTCGtgataaaaaaaacatgcagCAAACAAATAGGTAACAGTTTACTCAAAGCCAAACGGTACAATGCTTCTTTGCTGCAATTTTTTAACAGGCTGAAAATAGCTGTTTAGTCAGGGTCCATCAGAGACGATGGTAAGACATTATAACAGGGTCATACATGCTTATGACAATTCTTACAACGCAATACACCTGTTGGCTTTAAGTGAAGTGTTACTAACAAATCCATGTGAATATTACAAATATGTCATATTTATTCACTGTGTAATTGATATACTTTAACCTTGTCTTTTTTGTAACGACAAAGCATTTATTTAAATAAAGTTATGTATTGATGTATGGGAA

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740049 lncRNA upstream 1549 15174631 ~ 15174852 (+) True G1519892
TU1740045 lncRNA upstream 4213 15171956 ~ 15172188 (+) True G1519889
TU1740044 lncRNA upstream 4815 15171362 ~ 15171586 (+) True G1519888
TU1740034 lncRNA upstream 21854 15154310 ~ 15154547 (+) True G1519878
TU1740012 lncRNA upstream 28220 15147790 ~ 15148181 (+) True G1519863
TU1740027 lncRNA downstream 486 15186831 ~ 15191130 (+) True G1519873
TU1740061 lncRNA downstream 37619 15223964 ~ 15224303 (+) True G1519904
TU1740073 lncRNA downstream 62690 15249035 ~ 15249599 (+) True G1519915
TU1740074 lncRNA downstream 63312 15249657 ~ 15249945 (+) True G1519916
TU1740075 lncRNA downstream 63740 15250085 ~ 15250659 (+) True G1519917
XM_036951922.1 mRNA upstream 43067 14907954 ~ 15133334 (+) False LOC110495438
XM_036951925.1 mRNA upstream 43067 14907954 ~ 15133334 (+) False LOC110495438
XM_036951926.1 mRNA upstream 43067 14907954 ~ 15133334 (+) False LOC110495438
XM_036951928.1 mRNA upstream 43067 14907955 ~ 15133334 (+) False LOC110495438
XM_036951927.1 mRNA upstream 43067 14944100 ~ 15133334 (+) False LOC110495438
XM_036951943.1 mRNA downstream 21010 15207355 ~ 15251952 (+) False LOC110495440
XM_036951946.1 mRNA downstream 21012 15207357 ~ 15251952 (+) False LOC110495440
XM_036951944.1 mRNA downstream 21013 15207358 ~ 15251952 (+) False LOC110495440
XM_036951945.1 mRNA downstream 21013 15207358 ~ 15251952 (+) False LOC110495440
XM_021570686.2 mRNA downstream 69904 15256249 ~ 15266522 (+) True LOC110495444
TU1739843 other upstream 276229 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 361515 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 619055 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 677264 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 740281 14434762 ~ 14436120 (+) True G1519096
TU1740022 other downstream 22624 15208969 ~ 15216244 (+) False LOC110495440
TU1740959 other downstream 570148 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 610007 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 732812 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 751885 15938230 ~ 15938818 (+) False G1520748

Expression Profile