RNA id: XM_036951944.1


Basic Information

Item Value
RNA id XM_036951944.1
length 4879
RNA type mRNA
GC content 0.53
exon number 26
gene id LOC110495440
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15207355 ~ 15251952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTCGAAACTTCCTCACGTGACATCAGTCCAAGTGAAGATGTCAACATCGACAACCGAGTACACTTGAAGTTATTTGACTGATGTTTTTGTCGTATTGCTGGCAATCGGAAGGGAATGTCGATGTTGACCACTGCTTGACTGTCACATAAGATAGGTAAGGATGGCTGGATGTCACAATGGCCAATCCACCCTTGTCAACAGCTTGGCCACTCTGCTTCGTAATCATGgtgcATCTGTGCTGGACGGCAGCAGTACCCTGACTCTACAGGCAGACTCTCTGCAGCACCTAGGTCGTCTGTTTGAGCAGTACCTCCTCTCCAGGACTCACCAACATGGCTTCCTGGCTCTGCCCTCACACCCTGCTGACACCACCTCCCTACTGCAGCTCCAGTTCCTGTTTGACGTGCTGCAGAAGACTGTCTccctcaagCTCATCAATCCATCTGGGTCGAGGCTTCAGTCAGTGGTCAAGATCTTTCCTTTCAAGTCTCTCAAGTCCTTAGAGTTGAAGCGTATCCCCCCTCACTGTCTGGAGGACCTGAGGGGAGTCTACTCTCAGTTAGAGGTCTTCACCTGCTCCAAGAGCCTCAGTTCCctggagGAGctactgtctctgtgtggagGAGACCTCAGCTCTGCACTGCCCTGGCTGGAGCTGCACACCCTCAACTTCAGCTACAACACTATAGTCTGCCTGGATGAGTCACTGAGTTTACTGAATGTTCTGAAGTCTCTGGATCTTAGTCACAATAAAATCCAGGAGTGTGCTGACTTTCTCAAGcCTCTGAGTGAGCTAGAGCACCTCAACCTGGGCTATAACAATCTCCAGAGAGCACCAACGCTGGGCTTGAGCTCCAGAGCCAAACTCCTCACTCTCATCCTCAGAAACAACGAGCTGGAGACCATCAACGGAGTGGAGCAGTTGTCGTCCCTACAGCACCTGGACTTGGCTTACAACCTGCTACTGGATCACTCCCAGCTGGCTCCTCTGTCTATGCTGCACAGTCTCAAcatgCTGAATCTGAAGGGCAACCCACTGTTCTTCCAGAAGAGCCACAGAACCCGCACTGTCCGCCACCTCTCCCCCAAGGCTGCCTACctcagaCTCAGACTGGAcagcagccctctctcctcttcagagtTGTCAGTGCTACCCAAACCGGGACAGCTGATTGGGCAGCTTCAGTCCCAGGCCTCGCCCTTGATCACCAGGGCTCCAGAGCGGGGTAACCAGGAAGTAGTGTCCAGCGGGGGCGGGGAGTTGAGTGACAGCCTGTCGGTCAGCGAGGTGGGAGTGACACGACAACGCAAGAAGAAAGCCAAAAGTAAGGTGAGGGTGAGACGGGCTAGCATCTCAGAGCCCAGTGACTACGACTATGACTATGAACCCAGACCACAGTCCTCTATACAAGacaTCGTTCTCCCTCACCAGAAGGAGATTGAACGCATGGACAGTTTCAGAGACCAACTGGGTGAAGATTGGCTGCGCTACCAGCATCACCTAGAGGGGGCGCCAATCGCCACCCTAGACAAGGCGTACAGGCCAGCTCCTCCACACCTCAACAACAGTCTCTGTGCCACTCCCTCCCCAACCAACAACAGCCCCATCCAGGCGAGCCTCGCCACCTTTAAGCCCCCTTCTCCAGAGCTGGAAGTCCCGGAGGTTCTACCCCCACCGCTGCTCTCGTCTGAGCCCAAGGAGGAGGCCTCAGACTGGGATGCAGATCTGGAGACCGAGTCCACCCTCCAGTGGCCTGACCACAGCCTCGGGCACACAGAGTCCACCCTGGAGACTACTATGGCAGAGGGActgggtcaggggttagaggggACACCGGCGACACCCACGGAcaccagagaagaagaggaggaggacttgGGAGTTGACCTGTGTCACCCCCTGCTTGTGGGAGTACTATCatcatcagaggaggaggaggaggaggggctgaGGAGGAAGAACAGGGCCCAGTGTCCTGTGTTCCTCAGGGTCAAGCCAAGACACGTCCTGGAGGTGGACATGAGCAGGGGTCAGTTGCAGGCCCGGCTGGAGTTGGACAGTCTGGGGAGGTTCACCCTGTCCCAGGTCACCTGGACTGAGAGGgaggtggaGCGAACTCTTCCTGCTGTAGAGCTTCACTTCCGTTACatcagcagagagaggaggaggagacgctATGTTATGCTGGATGATGACCCCCAGGAGGCACTGCAGGCCCTGACAGAGGTCCTGTCGCGGGTGGTGGAGGAGAATGAGCGGCGGGTCATGGAGGGTCGTCCCAGCTGTGTCTGCCTGCAGTGTCTCCGCTGTGGGTCAGAGTTCACACAGCGGGGAGTGAAGGAGCAGGAGGACGGGGGGAGATTGAGAGGATGGGCTGGACtggaagagcaggaggaggagaggaagaacaaGTGCAGAGAAGATGGATTGGGAAGTACCGTCATCTGTCCTGAGTGTGGTAGTGATCATGTGGTCCAGCTGGCTGGCCAATCAGCTCCCTCCACCAGTACGCCCGTCCATGGTTCCCCATGCCAAGAAGGGACTGACCGACACTTTACCTTCAACCACAGAGATACACCTCTTCCCAGTCACCCTGGCAACAAGGACCCCATCATGGAAGGTCCTTCCTCTGCCAGGGCCAGCCACTTCGGCAGCCCTGCCATGAAGGCCTCAACCCAGGACACTATCCAGACCAGCATCTCCATGGAGGACCCCACCTCCTTCTTCTCAGCCAAAGGAAGCTCCTTCTCCCTGGGGGAGACCTGGGAGGACCAGAGCCGTGACCGGAGCCTGTCCCAACCTGCCAGCTTCTACAGTACAGAGGGCCAGAGTAAAGGAGGTATAGCAGGGAGCTACAGCTATGCTGTTAGTGCTACCTCACCTGGACCCCAGGATCAGCATTCAGAACAAGCCAGTCCAGGCCAGTTGGACCTTCTCTCAGAGGACTATGAGGCGGTGGACCATCGGCTGAAGCTCTTCTTAGATGTGGAGGTGtttgaagaggaagaggagctcCACTCCTTTCTCAAGGTGTCGACCGTGAAGTTTGGTGATCCGGTGGAGTTCCCCTCGTTCCTGGTGGTGTCTGACCAACGCATCTACTTCCTGGAAGTGACATCCGACATGGAAGGGCAGCCTTGTGATTGGCTGCAGAAGAGGGAGAGCCATGGAATCACAGAGCTGAGTTACCTGGAGGTGGGACTGGGCTCCCAGAGTATCCACATGGAGTTTGAGGACGGGCCTGTGGCCTACACCCTGCTAGTACGGGACAGCGTGCGTTGCAAACGCTTCTTCAGCCTCTTCACAGgagTGGTGCGTGAGTTGGCTACCAAGTCGGACAGCAAGCTTAAGTCTATCTCCACCACCAGGCTCAACCCACAGCATCATCTCTGGCCCCTTGTGTGTGAAGACATGCAGACTGATGTGGAGGATGGCCAGCTACAGTTCTTCTACCTCCTGTCCTTTCTACATCAAGAAGACCGTGTGACCCCTCTGACAGTGCTGGCCACCCGGGAAACCCTGTACCTGCTCAATGAAGACCACCAATGGAGCAAGAGCTTGCCCCACCCATCAGCCAATGAGAACGGGGGACCCTGCAGTGGGCGGGTCACTGTTCAGGAGAcccagccaatcagctgtgtCAGCTCTGTCCATCTATGGTCGTCTGACCCGTGCAGAATGGACATCAAGCTTTACGATGAGATAGTGAAGGAGGAGAAGACGTGGTCGTTGCACTCTGACAGTGCAGAGCTGGTGCAGGGCCTGCTGGTCTGGGTCAGAACACAATGGGAGAACATGTTCGGAGTCAAACTCGCCATCACCAACCTCACCCTACCAGCCTGAGGGAAAACACCCACCCttccaactgtgtgtgtgtgtgcacctgtgtgagtgtgggtctgtctgtcttcactgtCAGACTTGACCCTCAATAGGACAGTATGTTTACCTGGTTTGAAGCCAACTATGATTTCCTCATGTTTGGTCACTTTTACAAAAGCACTGATCTGTTAAAGCCTCATCTGAATCCCGTCCATTTTCTAACCCTGCCAGTATAGCCAGCTAGGGAGAGTGCCTTGTGGTGTTGCCAGTCCTGCTACATTCTAATGCACCTTGAATATGTGAAAGGGGTGAGGGAGAATCATGTGTTTCTTTCAGGGGGGTGAGGACAGgataaggagggagaaaggggtaAGCAAAAATGTGAGTTGAggggtaattgtgtgtgtgtgtgttatcaagGAAGTTAGTCCATTCCTCTGAGGCTCAGTGGACTGTGACTTCATCAGGAGTCCCGGGACTGGAACAGTGAGTTGTGACATCACACGCTCGGCACAAGGCTCTCTAGCCGTCCCGTGAGGCTCCGCTCCGGACACCTCTGACGTGACACCTCTGACGTGACACCTCTTAGTTATTTTCTTTTTAATCAGGGTCTTTGATGTCtctaaacactgtgattatgtAAAGGGAAACCGAAGGCCAAAGTAACCCAAGTGAAGAGTTACAGCCAAGGCAATGAACCGGGACAGTATCTGTGTTCTGTATCCTTGGGAAAAGTGCAGAATACGCATGATAGGGAATGTGAAAGGGAAGGGTTCTGACTGACCTGTTTTAAAGTGGGAGATGTTAGTTGGTTTGTGGCTGTCTGTTAAAATGTATAGTCTTATGCTAATACCTCTAGTGCAGTTTAACTATATTGTGAATGCTATTTTTGATGTAGACAGATGAAAAGATGTGTAGAAGTGGACGACAAACAGATGTGTGTAACTTAATTTATTTACCGTCAGCAAAtcaattataaaaaaatatagctttttatACTTTAAATAAAAATGCATATCTGTGGTACAAATACATCCTCTTATGACACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740027 lncRNA upstream 16228 15186831 ~ 15191130 (+) True G1519873
TU1740049 lncRNA upstream 32506 15174631 ~ 15174852 (+) True G1519892
TU1740045 lncRNA upstream 35170 15171956 ~ 15172188 (+) True G1519889
TU1740044 lncRNA upstream 35772 15171362 ~ 15171586 (+) True G1519888
TU1740034 lncRNA upstream 52811 15154310 ~ 15154547 (+) True G1519878
TU1740031 lncRNA downstream 2334 15254286 ~ 15254835 (+) True G1519875
TU1740083 lncRNA downstream 17569 15269521 ~ 15269819 (+) True G1519925
TU1740087 lncRNA downstream 34856 15286808 ~ 15287029 (+) True G1519929
TU1740090 lncRNA downstream 41358 15293310 ~ 15293611 (+) True G1519932
TU1740095 lncRNA downstream 63385 15315337 ~ 15315549 (+) True G1519937
XM_021570672.2 mRNA upstream 21013 15176401 ~ 15186345 (+) True LOC110495435
XM_036951923.1 mRNA upstream 74024 14974996 ~ 15133334 (+) False LOC110495438
XM_021570686.2 mRNA downstream 4297 15256249 ~ 15266522 (+) True LOC110495444
XM_036951936.1 mRNA downstream 24621 15276573 ~ 15329646 (+) False LOC110496998
XM_036951931.1 mRNA downstream 24626 15276578 ~ 15332387 (+) False LOC110496998
XM_036951932.1 mRNA downstream 24626 15276578 ~ 15332387 (+) False LOC110496998
XM_036951933.1 mRNA downstream 24626 15276578 ~ 15332387 (+) False LOC110496998
TU1739843 other upstream 307186 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 392472 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 650012 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 708221 14498786 ~ 14499137 (+) True G1519538
TU1739079 other upstream 771238 14434762 ~ 14436120 (+) True G1519096
TU1740959 other downstream 504541 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 544400 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 667205 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 686278 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 686449 15938401 ~ 15938818 (+) True G1520748

Expression Profile