RNA id: TU1740030


Basic Information

Item Value
RNA id TU1740030
length 517
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC110495440
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15207355 ~ 15251952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTGGACTGTGACTTCATCAGGAGTCCCGGGACTGGAACAGTGAGTTGTGACATCACACGCTCGGCACAAGGCTCTCTAGCCGTCCCGTGAGGCTCCGCTCCGGACACCTCTGACGTGACACCTCTGACGTGACACCTCTTAGTTATTTTCTTTTTAATCAGGGTCTTTGATGTCtctaaacactgtgattatgtAAAGGGAAACCGAAGGCCAAAGTAACCCAAGTGAAGAGTTACAGCCAAGGCAATGAACCGGGACAGTATCTGTGTTCTGTATCCTTGGGAAAAGTGCAGAATACGCATGATAGGGAATGTGAAAGGGAAGGGTTCTGACTGACCTGTTTTAAAGTGGGAGATGTTAGTTGGTTTGTGGCTGTCTGTTAAAATGTATAGTCTTATGCTAATACCTCTAGTGCAGTTTAACTATATTGTGAATGCTATTTTTGATGTAGACAGATGAAAAGATGTGTAGAAGTGGACGACAAACAGATGTGTGTAACTTAATTTATTTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740075 lncRNA upstream 686 15250085 ~ 15250659 (+) True G1519917
TU1740074 lncRNA upstream 1400 15249657 ~ 15249945 (+) True G1519916
TU1740073 lncRNA upstream 1746 15249035 ~ 15249599 (+) True G1519915
TU1740061 lncRNA upstream 27042 15223964 ~ 15224303 (+) True G1519904
TU1740027 lncRNA upstream 60215 15186831 ~ 15191130 (+) True G1519873
TU1740031 lncRNA downstream 2425 15254286 ~ 15254835 (+) True G1519875
TU1740083 lncRNA downstream 17660 15269521 ~ 15269819 (+) True G1519925
TU1740087 lncRNA downstream 34947 15286808 ~ 15287029 (+) True G1519929
TU1740090 lncRNA downstream 41449 15293310 ~ 15293611 (+) True G1519932
TU1740095 lncRNA downstream 63476 15315337 ~ 15315549 (+) True G1519937
XM_021570672.2 mRNA upstream 65000 15176401 ~ 15186345 (+) True LOC110495435
XM_036951923.1 mRNA upstream 118011 14974996 ~ 15133334 (+) False LOC110495438
XM_021570686.2 mRNA downstream 4388 15256249 ~ 15266522 (+) True LOC110495444
XM_036951936.1 mRNA downstream 24712 15276573 ~ 15329646 (+) False LOC110496998
XM_036951931.1 mRNA downstream 24717 15276578 ~ 15332387 (+) False LOC110496998
XM_036951932.1 mRNA downstream 24717 15276578 ~ 15332387 (+) False LOC110496998
XM_036951933.1 mRNA downstream 24717 15276578 ~ 15332387 (+) False LOC110496998
TU1740022 other upstream 35101 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 351173 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 436459 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 693999 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 752208 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 504632 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 544491 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 667296 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 686369 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 686540 15938401 ~ 15938818 (+) True G1520748

Expression Profile