RNA id: XM_021570686.2


Basic Information

Item Value
RNA id XM_021570686.2
length 2728
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110495444
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15256249 ~ 15266522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTTGTCCTGCATGAATGTGTTTGGGGCCCCGACATGGATGCAGGGGTCACATGGTACCACGAAACGCCGAATGGGTTAAAAAAGAGGGGGTTGTAGTTTATGAAAGAGCGGCGGAGGAGAAAGAACAGTTGTTGATAGTTTGGAGAGGCTACGAGGGGAATTAAGGCTGAAAACAAGAAGGACAGTTTTGAGCCTTAAAGAGCTGAGAGGGCTCCTGGCCAGGTGTCTGCTGAGGCCTCATCATGAGCTGGAGCTTCCTGACGCGTCTCCTGGATGAGATCTCCAACCACAGCACGTTCGTGGGGAAGATCTGGCTGACTGTGCTCATCATCTTCCGCATCGTGCTGACGGCCGTGGGGGGCGAGACCATCTACTACGATGAACAGGCTAAGTTCGTCTGCAACACGCAGCAGCCCGGGTGTGAGAATGTCTGCTACGACGCCTTCGCTCCTCTCTCACACGTCCGCTTCTGGATCTTCCAGgtgATCCTGATCACCACCCCTACCATCATGTACTTGGGCTTTGCCATGCACAAGATCGCCCGCATGGACGATGTTGAGTACCGGCCTCTTCATCGTGCCGGGAAGAGGAGAATGCCCATCGTGACCCGGGGGACACAGCGGGATTACGAGGAGGCAGAGGACAATGGAGAGGAGGACCCCATGATCACTGAGGAGATCGAGGTGGAGAAGGACAAAGAGAAGGTGACAGAAGGCTCTGTGAAGAAGCACGACGGTCGGCGGCGGATCGCGCGTGACGGCCTGATGAAGGTGTACGTGTGTTCGCTGATCTCTCGCATCGCCTTCGAGGTGGCCTTCCTGTTAGGCCAGTATGTCCTCTACGGCTTCGAGGTGGCGCCCTTCTACGTGTGCACGCGCTCTCCCTGTCCGCATACGGTGGACTGCTTCGTCTCGCGGCCCACCGAGAAGACCATCTTCCTCCTGGTCATGTACGTGGTTTCTCTCCTCTGCACCACACTCACCCTCCTGGAGATTCTCCATCTCGGTGTCGGCGGAGTCCGCGACACCCTCCGCGGGCGCGCCAGACGCCACCCCACCCCAGCTCTTCCCCCTGTGGCCCGGGGGTCCCTCTGCAGTTCCCGCCATGGACCCACCGCCCCGCCAGGGTACCACACGGTCCTGGGGAAGAAGGACCCGTCTGGCAAGCTGAAGGCAGAGTTCAGAGATCCGTTGGCGGGGGACTATGGGAGGGAGAGCCTGGGGGACGAGGCGTCCAGCAGAGACCTGGAGAGGCTGAGGAAGCACCTGAAGATGGCCCAGCAGCACCTGGACTTGGCCTACCAGAACGAGGAGGGCCAGGGGTCCCCGTCACGGAGCAGCAGTCCTGAGAACAACACCACGGCTGCAGAGCAGAACAGACTCAACTTGGCTCAGGAGAAACAGGCGGCGGCCAGGGAGAAAGGAGTACATGCCTGAATCCTGCTTAATGCCTGCTCGACTGCCTGCCTGCTTTCTCTTCCCAACTGGCCCTCCACAGATGGGGAAGCACATGGGAACACAGCCAGACAGTGGAGAGACTGAAGAGTGTGGATGTGTGAGGGATGGAGGGCCTTGCAGTATTAAGGGCCAGGGACAACTTCAATTTAAAGCTGCCCAAGCTTCCGTAAAGCTACAGTACAAATCTCCTTAGCGTCTGACTCGTTCGACTTGAGTGCCTCCAAATACTTTGGTCTCAAGTTTCAGCTTGCCGAAACCCCACACCCTACTTTGGCAGTGCCTGTTGCTGAAGCACAGCCTTCTAGATGTAGTCGACACCCCGTTTTGGTTTGtccatttttgttttcattttttttcgcAGTCATTCTCTTCCAAAGTTTTCTCGGGTCAGTTTCTGTAGTCTGTCAGGTGACTGGGTCTCATCCAGTTTAAGCTTTAAtttaccccccttctctctactGACAAAGTTTACTAGTCGGTCCAATTTTAAGAGCGAGGCTCAACAAAGTCTTAAAAGCATTTACTGCACATGTTGTTATGCCAGGGCTTGTTGTTGCTGGATACAGAGTGAACCACAATGAACACTTGCCTGCGGGGGATGTCCTTTTGCACAGACATTAAGAGGATgtttgtgtgtccatgtatgtgtGTTGTATACAAGGTGGTGGGAGGTTTTCTGAAAGTGCAGTTCTTTAACGAGCACTTTTAACTTAATCTTGGACGTTAACCGTACTGCTTTTTTTCAGAGGATTAGTAATTAAAAATGAATTGTTTTGACATTCCATGAGACTCCACTCATTGTTAAAGCCTTGTATATTAGTCATTCCAACAAATTGGCCAAATGTGATAAATACCTGGGAAATGCTTGAATCCTGTGATGACTATAAATGTTCTTCCATGCTGTTTAAACACTCCTGTAGTCCTCCTGTACCTGTCATTTTGCTCCTGTCCTGGTTCCTTTTGTTCATGCTAGTCGGTGAGTTGTTTTGTTTAAACTTTATGTTTGTACTGGAATTCCAAGGAGGCAAATGCACCAACATTTGCTTATCTGTCATAATGTGATGGTTCTTTGAAATGGTTGAGCTGGAAACGATCGTGTTGTGCGCTGTGTTCAATTCATTTTTCCTTTCGTTTTTTAAAATTCggtacaaaaataacattctattTTTTTTCAGTGTTTGTAGTATTTTTGTTacattgttttgtagtttttgtAACTGTAGGGTTTAGTTTCATAGAAATACATGAATAAATATATTTGAACAGAA

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740031 lncRNA upstream 1414 15254286 ~ 15254835 (+) True G1519875
TU1740029 lncRNA upstream 4325 15251345 ~ 15251924 (+) False LOC110495440
TU1740030 lncRNA upstream 4388 15251345 ~ 15251861 (+) True LOC110495440
TU1740075 lncRNA upstream 5590 15250085 ~ 15250659 (+) True G1519917
TU1740074 lncRNA upstream 6304 15249657 ~ 15249945 (+) True G1519916
TU1740083 lncRNA downstream 2999 15269521 ~ 15269819 (+) True G1519925
TU1740087 lncRNA downstream 20286 15286808 ~ 15287029 (+) True G1519929
TU1740090 lncRNA downstream 26788 15293310 ~ 15293611 (+) True G1519932
TU1740095 lncRNA downstream 48815 15315337 ~ 15315549 (+) True G1519937
TU1740098 lncRNA downstream 80886 15347408 ~ 15348810 (+) True G1519940
XM_036951943.1 mRNA upstream 4297 15207355 ~ 15251952 (+) False LOC110495440
XM_036951946.1 mRNA upstream 4297 15207357 ~ 15251952 (+) False LOC110495440
XM_036951944.1 mRNA upstream 4297 15207358 ~ 15251952 (+) False LOC110495440
XM_036951945.1 mRNA upstream 4297 15207358 ~ 15251952 (+) False LOC110495440
XM_021570672.2 mRNA upstream 69904 15176401 ~ 15186345 (+) True LOC110495435
XM_036951936.1 mRNA downstream 10051 15276573 ~ 15329646 (+) False LOC110496998
XM_036951931.1 mRNA downstream 10056 15276578 ~ 15332387 (+) False LOC110496998
XM_036951932.1 mRNA downstream 10056 15276578 ~ 15332387 (+) False LOC110496998
XM_036951933.1 mRNA downstream 10056 15276578 ~ 15332387 (+) False LOC110496998
XM_036951934.1 mRNA downstream 10968 15277490 ~ 15332387 (+) False LOC110496998
TU1740022 other upstream 40005 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 356077 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 441363 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 698903 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 757112 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 489971 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 529830 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 652635 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 671708 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 671879 15938401 ~ 15938818 (+) True G1520748

Expression Profile