RNA id: XM_021570717.2


Basic Information

Item Value
RNA id XM_021570717.2
length 2943
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110495449
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15333385 ~ 15344802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTGAAACCGCCGAGTTCCATGTTTGTATCTTCAAATTGAGAGCGGAGTTGAACTCCATGTTGAAACAAAGTTACCAACTCACTTTTAAATGTATATAACTTTTATTTGTAGATTTTATACCGTTCTGGTACGTCATTGAATATTCGAGAAATGTGATCGTTTGGATGCGTAATGTATTTAAATACTGTTTGCGGTTATGTAACTTTGTGCACATTTATAATTTAATGTTCCTAGTCAGCGAACAATCTAACACGGAGCAAAGTTTTTAGTTTCTATTGTGGATAAAGTCTGGTGCAATGGACCACCAGTCCTCAATAATCACGCAAGTTAGTCGAGATgaagaggggaatagagagaaggGTCCCCCACCCTCGTCGTCTAAGAAGCCCAGGAGTCGAGGCCTGTTCCACAGCCTCTTCTGCTGCCTATGTCATGACCAGGCTGAGCCCCCGCCGGTCAACAACAACGCCCCGCTACTGGTGGAGGAGAACGGAACTGTCTCCAAGGTCCAGGTCAGACCGCTGCTTCCTCAGGCCAAGTCAAAAGACGCAGGGAAGATCTGTGTTGTCATAGACCTGGATGAAACACTGGTCCACAGCTCATTCAAGCCGGTGAACAATGCTGATTTTATCATTCCCGTAGAGATCGATGGAACTGTTCATCAGGTATATGTGTTGAAGCGACCTCACGTGGATGAGTTCCTTAAGAGGATGGGAGAGCTGTTTGAATGTATTCTGTTCACAGCTAGCCTGGCTAAGTATGCTGACCCAGTGTCAGACCTGCTGGATAAGTGGGGTGCGTTCCGCGGCCGTCTGTTCCGTGAGTCGTGTGTGTTCCACCGGGGGAACTACGTGAAGGACCTGAGTCGTCTGGGAAGGGACCTGAACAAGGTCATCATCATAGACAACTCCCCAGCCTCCTACGTCTTCCACCCAGACAACGCTGTGCCTGTGGCGTCGTGGTTCGATGACATGGCCGACACCGAGCTCCTGGATCTAATCCCCTTCTTCGAAGGGCTCAGTAAAGTGGAGGATGTCTACACGGTGCTCAGGCAACAGAGGGACTCCAGCTAGCAGTGCTGTCAGTCACCCTACCCCTCTACTACCGCCATCTACAGGACAGACCGAGAACCGCAGCCTTAAAGCGTCTTCACACCAACCGTACACCCCCCTCAGCCTACCGTCCACGAGATCAACCACAAGACTTTCACCTCCAAACATAGGGAAACATAGGACTTGACCCTCCAGAACACGATCTACCATCCCTCAACCACAGATGGGCTTGTGTAGATGGATGTTGTGGGTTATAATGAGTTAGGTTTTTATACAGTGCCTTTCATCAAATGTCATTGGAGCATACAGAACAGTCAAGTAGAGGGAATCTACCGCGTTCTTCACAATGAAGAAAAAACATGTAGTAGCAAGGTAATGGGAGAGAACCCCCAGGATCCAATCAGAATCAGTTCTCCAACGCCGGGTTGGAGTCGATAAGTTTCCTGAAGACCGAACCGTTCTAGAACTCTCTATGGAAAAGCAAATGATACTGTATGAATGGATATTTACTACTTTTAACACTttaatgtgtttttttatttccTTCACCAAGAGACAATTTAACATTTTTAACAAGCAAAGTATTGGCTTTGTGTAAGTCAAGTGGTTTTACTTCTTTCATCGCTCAGCTAGTATCATAATGACTAGCACAATGGGCATCAGTACTTGTTAAAGGGGATGGAATCATAGAGAGGGACATTTATCAGTTACTGCAGCTATCAAAACGTTCCATGTCCCTTAATCGTTATTTGTTTCATTTAGTTTTTTATTAAAACCATAGGAATATGTGCGATAATGTGCCAGATAACATTTATACGGGGTAATGGCACCGTTTTCATAACAAATACAGTAGTCAGATGACTGAAATGCACCTTAAATTACAATATAATCTTTTAGGATTTTTTTGGATTACATTGTCTGTGGACCATGGACCTcaacccagacagactaaatgCTCCAGCTCAGACACATGGACACAGTACCATGTACACACAGTACCATTCAATGGCCTGGAAAACCCTTGGTATTCTGCAAACGGACCTGGATATGTGTTGGAAAAACATATTTAGATTCTGTCCAGGCAAACTTGGTCGTCCCTTTGCTGCAGTATCAACGCTACAGTCATGGAGGAGGGCTGGGCGACTATATTGTGAATACCGGTATGGATCCACATACCGCTATATATTTTTACAATTACAGAATTTTGATACAGTGCTAAATTAAAGGAGAAGTTATACTAATTGGACTAGTTCACTGTCAGTTttgtcctggtttggttgagtataaaaccatcagaatggagaaagcccATTTTAAAATCACAAAGAATTTATTTGTTGCCATTCTAGGTCATGCACTAATCATGAAACACATttagacaaaaaatatatattttgtctgTAACGCCCTGCCTTACCATGGAGAAAAGGTGTTGAGACTGTGTGTTGGTCATCTGGTTTTGACAAGCACACTTCTCCCTCCTCTTACTGGAAACAGTACTTGAATACTTTCCCTTTTTCATGACCTCTTTTTAAAGGACTGCAAATACTATGCTTCTTTAGACCAGATTGTAGGATTTGGGTAGTTTGGTTTTTAAGCTTCTGACACAAGTTAGGACTATATTAATTGGTACTTACCTGGGTTTggaacaataaaataaattgttattTGTAAGTAAAAACTAAGATGGTCTATCAGGAAGTGAACAGGAAGAGTAGTTTAATGGATTGAGTGATTCGTATCGATTGATACTGTTTTATGAATGCATGGGGAAAAGCCACTGTGTTGAAGTTGACTAAAGGCCTACTAAAATACCTTGTGAAATAAGATGATTCAGAGTTTAAATAACCGTACACCCATGATAAATCTATCAGTattaagaaataat

Function

GO: NA

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740095 lncRNA upstream 17836 15315337 ~ 15315549 (+) True G1519937
TU1740090 lncRNA upstream 39774 15293310 ~ 15293611 (+) True G1519932
TU1740087 lncRNA upstream 46356 15286808 ~ 15287029 (+) True G1519929
TU1740083 lncRNA upstream 63566 15269521 ~ 15269819 (+) True G1519925
TU1740031 lncRNA upstream 78550 15254286 ~ 15254835 (+) True G1519875
TU1740098 lncRNA downstream 2606 15347408 ~ 15348810 (+) True G1519940
TU1740100 lncRNA downstream 4144 15348946 ~ 15349227 (+) True G1519942
TU1740116 lncRNA downstream 13608 15358410 ~ 15399001 (+) True G1519951
TU1740122 lncRNA downstream 16109 15360911 ~ 15365587 (+) True G1519955
TU1740130 lncRNA downstream 29980 15374782 ~ 15387181 (+) True G1519959
XM_036951931.1 mRNA upstream 998 15276578 ~ 15332387 (+) False LOC110496998
XM_036951932.1 mRNA upstream 998 15276578 ~ 15332387 (+) False LOC110496998
XM_036951933.1 mRNA upstream 998 15276578 ~ 15332387 (+) False LOC110496998
XM_036951934.1 mRNA upstream 998 15277490 ~ 15332387 (+) False LOC110496998
XM_036951935.1 mRNA upstream 998 15288549 ~ 15332387 (+) True LOC110496998
XM_036951940.1 mRNA downstream 74259 15419061 ~ 15490199 (+) False LOC110495439
XM_036951941.1 mRNA downstream 74259 15419061 ~ 15490199 (+) False LOC110495439
XM_036951938.1 mRNA downstream 106387 15451189 ~ 15490199 (+) False LOC110495439
XM_036951939.1 mRNA downstream 106387 15451189 ~ 15490199 (+) False LOC110495439
XM_036951942.1 mRNA downstream 106388 15451190 ~ 15490199 (+) True LOC110495439
TU1740022 other upstream 117141 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 433213 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 518499 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 776039 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 834248 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 411691 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 451550 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 574355 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 593428 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 593599 15938401 ~ 15938818 (+) True G1520748

Expression Profile