RNA id: XM_021570682.2


Basic Information

Item Value
RNA id XM_021570682.2
length 4769
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110495441
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15585908 ~ 15596051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATCTCCCGTCTCTGTTGTTGTACGCCCCGAAAACACAGCATCAGCACCAGCGCGTCAACAACACCAGCCTGCCTGCTTTCTGTGCATACTTAGGTTACCTGCCTCCGTTCCACCATGAGGTTTCCATGACAAAGAAAGCGGCGAGACTAGGCCTCCattcctccttctctgtctcatTTCGCGCAGTTATGTCTTTGGTTCGCGGCTCCCTCTCGCCATGCCTGCGGACCGCCTGTACCTGCTTTTCTCGCTGGTGGTGATCTCCTGCGGGGATGGTGTCGTGAGGGCGGCGCCTGAGGGTGGTGTCCTCGGCGGCCTAATCACGCTGCTGACTGCGGAGGACAATGCTATCGCCACTGTCCCAGACGGAGCCATCACCGGCCAGACGGCTCTTTCCCAGGTTCAGACTCCGTCTGTCCTAACACCAGAgccgccctttgccttgaggGTCCTGGTGAAGGATCAGGTGACCCGGCGGCGCCTGGGCGGGGCCCAGGTGGGGGTGTTTGTCAACCACACCCTGAGTAGCCAGGCCCTGactggggagaagggagaggtgcTGCTCAGGGTCCCCTACAGCCTGGGACTCAGCCTCACCATTGTAGCTAGCATGGAGGGATACGTCCTCACCCCGTTGCCCTGGAGGACCACCAAGAGACCTATATTCTCCTCAGTGACCTTATCGCTGCTCCCTCAAAACCAAGGCAACATCTGGCTGTTTGACGACTCCGTGCTCATCACTGGGAAGTTACCTGACATCTCCTACCAGCCCAGCGTTCAGTTCCCCAAGAGTCACCTGATGCTCTCTGACGGCAGTAACACCTCCACAGTGATGGCCTACCTGACCGTGCCACAGCGCCACCTAGGCAAGGACTGTGTCAACTGCACCCCAGGCATCATTCACAACAAGTCAGTGTTCAGGAGTGTTGAGTTGCGGGCGATGGCAGCGGTCAGCACTCTGCTGTACTCTGGTGGTCAGGAGGTCCAGGTGAAAGGCCCCATCCAGATCTCCCTGCCCCTGGCACACACCACCAACCTGAGGCCCTCGGACACCCTCCCTGCCTGGGACTTCAACACCAAGACAGGTGCTTGGGAGAACCAGGGTCTGGGGATAGTGAAGTTGGTTGGAGATCATCTGGTCTGGACCTACATTGCTTCTCACCTGGGTTACTGGATCGCTGCACCCCTACCCTCCTCCAACGGTTATATGGGCCATGCCAGCTCAATGGAATTCCTCTCCTACCACACCTACCTGCTCGTAGGAATACTGGGTGGGACTCTGGTTATAGTCTTGGGGTTTCTGGCTGTGCTGCTGTGTCAATGTGGAGGTTCAGGTTCCTCTCGTGGGCCGAGGAGGAGAGCACGGTTCTCGAAGCGGTCCGCTCTGAAGAAGGACCAGACCACCTCCACCCACATGGAGGAGGGCCATGCCATGATGTCCTTCCACCCCGGAGACAGAGCCCACAGCCTGGCCTCGCGCAGCGTCCAGTGTGACCCCTCCACCCCCAGGCACAACAAAGCCAACTACAACATCTATGTGGAAGACCCCGGGCGTGGGTCCGCCCTCCTGTATGAAAATGTGGGGAGCGGGGCCAAGGGACCCCAGGCATCACACCACTACATCAACAGTGAGGAGGTGGCCAGGCTGAGGGAGAGGTCCAGAGAGGAGCGGAACAGAGCCCACCTGGGTGGAGGTACTCAGCTGCTCCACCTTTACAACCAGCCTGTAGCCAACCTCCAGGCCCCGGAGCGCTTCAGCTGCCAGGGTGGGGAGCAGCAAGGATCAGGCTGCAAGTCGGCCACCTTCCCCCGTAACGGAGGAGCCTATGACACCCACTCCCACTCTGAGCAGGGCGGTCATGACAGCTACACCCAGACCCTCCCTAAGAACCCCCACCATGCCCAGGGAGCCAACCCCCAGCAGGGCGGCCAGGACCAGCCACAGGCCCTGGAGACCACTCCCCAAGGCCCAGCCTCTAATACTGGGGCGTGGGGCCGTTACAGCAGCCTCCCGGAGTCCTCCGTTTCCGTCCCCGGTACTCTGAACGAGGCGGCTGGAATGAGGGCCTTCAGCAGTGGGATGGGGGGCCCCAGTGAACTCCAGGGGATATCAGAGCGTACACTCCTGGAGCTGACCCGAGGCAAGGCCTTGTCGCCTCACCCCAGGGCCTGGTTCGTCTCCCTGGATGGGAAACCAGCCGCTTCGGTCCGCCACTCCATCATAGAGCTCCAGGGACGCCATCCACGGCCCCCCAGCAGCAACGACACCAGCCTGGACTCTGGCGTGGACATGAATGAGCCCCAGCAGAGTGTGAGGGAGGCGGAGCGAGAGAGGCCTTCCATGCGGGGCTCgttccaccaccacagcagagggCGCTACAGCGAGGAGCAGGACCTGAGCAGCAGTGAGAGCGGCACCACCGCCACCTGCACCCCTGAAGACCCCTACCTGAGGAACATTCTGGACGGGAGCAGCGGGGCCATTCCCAATATCCCGGAGGAGCGGGACGGAATGGACACGTCCAGTGCACAGGAGGACAGTGAGTCGAGGGGGACACCGCCCCCACGCAGgctgaggaaggtgagggagaaggggagggccGAGAAGAGAAGCGCCAGGCACCATGTCAGAGAAGAGAGGCCTCTGGTCAAACGGAGCTAAGGCACTGCTCACCAGAGATGGACTGGGATGGGACTTGTTTCATTACCAGTCAATTCTGGAAGTGTATTGACATTATTGGCATTCAGTAGTTAATGGGCATGTTTCATGTCCAGTTGCATGGTCAGTGCTTTTTCCTGAATTGGCTGTGATGGTTACAGAAATGTTGAATCTGTCAAGAAGGGATTGAGTTTATTGTTTATAGTTTTCCTATAGGAGTCGTATGTTGACCCCTATAGGGGTCAACTTCTAAAAGGAATAGTTAGATAGATGCCAGTGGACACGGCAGTAGTATGGCTTCAGATCATCTCATTCCTGGCATCTGCGTCAAAGAAGATGCGTTCTTTACACTGCCTGCGATGAGGAGTTAGAGATACTGTATAGAGAGATAATGAAGGGTAATTAGAGAGGATAGAGGGCTGTATTGGGATCTGCCAGCAGAGACGGACAGGGATACAGTCCTCCTGTACAGAACACTGACACTTATCCACCGTGATTGCCTGCCTTTAAAGGAAATCGATATTAACACCATTGCCTGCTCTGCTCACAGTGTTTAAGACTGGCTGTACCCAGCCATCTGTCTATCGCTCTGTTTACTAGACACTGATTCACAGCTGTCCCTTTTAGAGGTCATCTTTACACCTATTAAGGGGGAAATACCATTATTTCTTTGAGAATGCATGAAAGGTATAAAGTAAAATGTTGTGTATGAAAAGAGGAAAGTATGTGTATTTGACGTGTAGTGTGAAGACAATTGGAAAGGATTCTCTTCTTAGGGACATTAAGTCTGAGGGATACTAATCCAGTCATGTGTTACTTTAACATATTCTTCTTCAAATAGTTACTGTTGATGTTCAATGATTCCTGTTCCACGAGCAGATCTTACACAACACATCGCTGTCCTTACATACAGATGGAGTATGGGGAGGTGGTCAGTTTAAGCTTTTATTGTTCAGTCTAAAAAGCACAGAACACTTTCATTTGACTGTTTGTGATGCTTTGGAGCACAACTGGGAACGATACACATAATATAATTTGATTGGTTAGAACCCACTGCAATGAGAACGTAATAAGAGAAACATAAAACACTCAAATAAAGGAAAGCACTCAacaacatttctttttttttttttttgtaaaaagtgAGGTGGTATTTCAAATGAACACAAACCATATTGCTGTGATGGACTGATACATTTGGTGAAGCACACAATCTCCTCCTGAAAATGATCTGACCAGCGATATCAGTCGTCCTGCTGCTAAATTTGAAACGACATTCATATTTTGCCCATATTTAGTCTTCCTCGTGGTGTGACATCACACACGCCAGTCCTTCAGTGTGTATGAGGATAAATAATGTACATGAATAGCTTTATTTGATATGTACATACTCATGCATATGATCTAGTATGTGTGATCGTGTATTTTTATGTATGTATGCATACATCGTCCTATCCTTTCTCAGCAACTGCGACAAAAAATGTTCTGAGAGAATGAGAATGCTTCTCAGAGTGAAGAAAGATGTTTTTTTGAGCCATCGTCGCTATTCATAAACCCAAGCTTTAGTGTATGTGCTTTACTTCGGAGGTTTGTTACATTATTGTATGTTAGCTTTGGTGCGATGAATAGGTTCAAATGTGATCCGGGGTGTAAAAAGCTTGACGACGTAGCAACTTGTACCTTCTAAATGTAGCAGCGCAAGTTATACACCTGACGAATGCGGCGATGATTTATGAAGCTTAAAATGATTGAATGCtgatcatgttgttgttgttgtcgccaTTGATGATGGTTATGAAAAACAAGATGTTTCAACCGTTGGAGAATTGTATAAAGTATAGTATGTAATAATATTTCTCAGAGACAAAACAGACCCCACTGGCCCATCCTTTTCAAAGTGGCCTACACTGAATGTATTTCCTTGTATTTATTTCATTGTAATGTAGTGTATTTCTACTGTCCGTATTCATTTAACATTAACTGGCATTCAGGCTTTTGAAACGGGCATTTATTGTGTTGATTACGTCAGTATATTACAGTAGTGTGATTAGTCTGCCTTTTTGTGCACCTATCAATGCCTAAGTAATAAACTCACTTGATACCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740852 lncRNA upstream 23594 15561818 ~ 15562314 (+) True LOC110495448
TU1740847 lncRNA upstream 37519 15547947 ~ 15548389 (+) True G1520548
TU1740845 lncRNA upstream 40888 15544816 ~ 15545020 (+) True G1520546
TU1740826 lncRNA upstream 41666 15543946 ~ 15544242 (+) True G1520533
TU1740822 lncRNA upstream 44246 15541461 ~ 15541662 (+) True G1520529
TU1740834 lncRNA downstream 7927 15603978 ~ 15614676 (+) True LOC110495451
TU1740884 lncRNA downstream 75682 15671733 ~ 15674662 (+) False LOC110495637
TU1740886 lncRNA downstream 75682 15671733 ~ 15674662 (+) False LOC110495637
TU1740887 lncRNA downstream 75682 15671733 ~ 15674662 (+) True LOC110495637
TU1740990 lncRNA downstream 228676 15824727 ~ 15825140 (+) True G1520677
XM_036951985.1 mRNA upstream 22669 15554859 ~ 15563239 (+) False LOC110495448
XM_021570715.2 mRNA upstream 22669 15555952 ~ 15563239 (+) False LOC110495448
XM_021570716.2 mRNA upstream 22669 15556381 ~ 15563239 (+) False LOC110495448
XM_036951960.1 mRNA upstream 49098 15520237 ~ 15536810 (+) False LOC110495446
XM_021570719.2 mRNA downstream 11432 15607483 ~ 15615215 (+) False LOC110495451
XR_005037384.1 mRNA downstream 14919 15610970 ~ 15613205 (+) False LOC110495451
XM_036951979.1 mRNA downstream 26136 15622187 ~ 15674929 (+) False LOC110495637
XM_036951981.1 mRNA downstream 38530 15634581 ~ 15674929 (+) False LOC110495637
XM_036951982.1 mRNA downstream 50008 15646059 ~ 15674929 (+) False LOC110495637
TU1740022 other upstream 369664 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 685736 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 771022 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 1028562 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 1086771 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 160442 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 200301 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 323106 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 342179 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 342350 15938401 ~ 15938818 (+) True G1520748

Expression Profile