RNA id: TU1740834


Basic Information

Item Value
RNA id TU1740834
length 2309
lncRNA type read_through
GC content 0.46
exon number 5
gene id LOC110495451
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15603978 ~ 15615215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGCTCCCTGCTGTTCTGGATAACAGAATAATCCACGCGTGGTCTATCCTGAACTTCTTGGATCGGTCTGTGTTGCTTCTTCTCGTCATTTTGGCTAACATATGGTGAAGAAGTATCGGTTCTGCTCGGGCTATCGCTGGGACAAATCGTGGGAACCGCGTCATCCCACAACAATCACTTTCTCGGTGTATGGAGTCGAAAACATTCTTTGCTGAAATGAGCCTCGCGTATCTGAGTGCCGTTCAACACGCCATTCTCGTGTAAGGAGGCGAATCCCACCAATTTTCGGAATACGATGTAGTCTTTTGGAAAAGAGTGGAAACTGGTGGTTTGCAGCCCAGGACAATGCACCTTGTCGGCGTGTTAAATAGAGTAAACTGAGGCAAGCACTAAAGCTGTGTTCGAaaacccatactaacatactgtgtactacatacttaatgagtatatactattagttcattttagcatactgtaaacGAACAGTATCCTTCTCGTCCTTTTGGCTAAGAAGAAGAAGTTTCGGTTCTGCTCAGGCTATCATGGAACTCTGAGGTCTTCCCATTGCTTCCTGTTGAGTGTACAAGTTCTTCGCATGTCTAccagaagttgatgctgttgctatgcaaccttaACAAATTACTAGTTAGACATTTTACGAATTTGGGTGCGTTCTTAAATTccatctggagtgccagagttcgctcgtaaattcagagcgtttcgcacttggagtaccaagtctaggacaaaaaggcttctcaacagtttttacccccaagccataaaactccagAACAGagtGTTTGTATGAGATCAGTCAACAGGCTGCACCTCCCTGTAAGGATTACCACCAACTCACAGTCACCCAGAcacagGTGGTTTTCAAGGTGTGGAGAGTGTCCTGTCCTCTACGACACGAGAAACCACAACCTGCAGAAAACAAGAAATCACACACAGACTTCCTACAGGATAGCCACGCacaagGTCACATAGGGCGAGTGTTTGGTCCACACACTCTGGACTATGTGGTGAACCTGTGTTGGCATCGCTATGACTACCTGGTCCGGCTCCCTGATTGGCTGCTCCTGAACATCCTGTCCTTCCTGGAGTGGGCAGATATTAAGAATATCTCCCAGACCTGCAAGAGGCTCCAACAGCTATGCTGCAGTGAGGGGTTTTGGGCGCAGGGGACAGCTGGGGCCAGGTACGGGCAGAGTGAGGTCACTATGGAGGGTGTGAGCCCTACTCTACAGCGCCGTCTGGTGGTGTTTCACAGAAGACAGGTGCTCTCCCGTCtggcccagcagcagcagcacagcaAGAGGAAGAACAGTGTTTGGCATCTGTGAGAGAGTTAGCCTGGTCACGCAGCGCTCTCGTTTCGTTTTACTTCAACAGAATGTCAGCTATCGCACGATCAGGCAGATTTCACCAGAATACAtgtgagagggacagaggagcaaagtctgtctgtctgtctgtccgtgtctCTCAACCACTTTCAAGATATTTTATTATCATCTATTACATTTCCATGACCTGACTAGTTATGTTAGGCACATATGGCAGAGTTAGTTTACATATGTAGTGTAGCTGCCTGTCAGTGTTTTGAATGGCCAGCAGGTGGTGATATTAAGCAGAAATCAGCGCCTCATAAACCTCTTTGATTCACTAATAGGTGTTTGGTAGCCTGCTGTAGAACATGTGTGCTCAACTAGGGGAAGAGGTATTGCTACTCCAAAACCTTTTAATGGTTATAATGATACATTGCTAATGTTGTTTGTGTTTTTGGTCTCAAATGATAGAATAAAGAACATACGGCACAATCACCTATACATTGTGTCTGTGATGAATCAAACATATAGACAGTAGTTCATCAATAGAAGGACCATCTTGTATTCTCCAATGTACTGCAGACAGTCTGGAAGTCCTAATCCAATGCATGTGATTGAATATACTGGTCGCACATCTGAGTGCTCTAGTCTTCTCTAACCACCAGAGGTTAAAGCCTATAGTACTGTAGAGGCTTTCTGCTTGGGCTTTATCATGTTAGAGACCCCCCTCTGGTGTGTAGACTCAGCTGTAATAAAATTACATTCTCTGAGtgatgcagcacacacacacacacacaccacaccgcaccacaccataccacaccacaccacagttCTCTTGGGGCATATTGACAATTGATGGACCACAATGATTGTATAGAGTAAAGCAATCACTGCAGTTATCCAAGGTTGAGTTTAGTTGTTCTGTTGCCATGGGGATGTGCCCATCTTTGAATTGTTTTTGGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740852 lncRNA upstream 41664 15561818 ~ 15562314 (+) True LOC110495448
TU1740847 lncRNA upstream 55589 15547947 ~ 15548389 (+) True G1520548
TU1740845 lncRNA upstream 58958 15544816 ~ 15545020 (+) True G1520546
TU1740826 lncRNA upstream 59736 15543946 ~ 15544242 (+) True G1520533
TU1740822 lncRNA upstream 62316 15541461 ~ 15541662 (+) True G1520529
TU1740884 lncRNA downstream 57057 15671733 ~ 15674662 (+) False LOC110495637
TU1740886 lncRNA downstream 57057 15671733 ~ 15674662 (+) False LOC110495637
TU1740887 lncRNA downstream 57057 15671733 ~ 15674662 (+) True LOC110495637
TU1740990 lncRNA downstream 210051 15824727 ~ 15825140 (+) True G1520677
TU1741007 lncRNA downstream 255058 15869734 ~ 15870406 (+) False G1520691
XM_021570682.2 mRNA upstream 7927 15585908 ~ 15596051 (+) True LOC110495441
XM_036951985.1 mRNA upstream 40739 15554859 ~ 15563239 (+) False LOC110495448
XM_021570715.2 mRNA upstream 40739 15555952 ~ 15563239 (+) False LOC110495448
XM_021570716.2 mRNA upstream 40739 15556381 ~ 15563239 (+) False LOC110495448
XM_036951970.1 mRNA upstream 67168 15520237 ~ 15536810 (+) False LOC110495446
XM_036951979.1 mRNA downstream 7511 15622187 ~ 15674929 (+) False LOC110495637
XM_036951981.1 mRNA downstream 19905 15634581 ~ 15674929 (+) False LOC110495637
XM_036951982.1 mRNA downstream 31383 15646059 ~ 15674929 (+) False LOC110495637
XM_036951980.1 mRNA downstream 32403 15647079 ~ 15674929 (+) False LOC110495637
XM_036951984.1 mRNA downstream 106657 15721333 ~ 15723189 (+) True LOC110495639
TU1740022 other upstream 387734 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 703806 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 789092 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 1046632 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 1104841 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 141817 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 181676 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 304481 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 323554 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 323725 15938401 ~ 15938818 (+) True G1520748

Expression Profile