RNA id: TU1740884


Basic Information

Item Value
RNA id TU1740884
length 2884
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110495637
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15622187 ~ 15674929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttgacgaggaggaagaggaggaagggaaggaggaggagggggattgGCTGATTTGTATCAGCTAGATAAACTACAAACTTGGACAGCAGAATGCCCTACCTACGTGATACGGAATGCCTTTTTCAAATCCTTACGATTATTTTTCTGTGACAATCTGTGAGAATGATGACGAAGCTTTTTTTTCCCTCTTCCTTTTTGCCAGGTAGCCTTGCCTGCTGATGGCTACCCATaagccccctctctcactctgacGCACTATAGCAACAGAGTCCATCCATATTGACCACAGTCTGTTTGTTCGTCTGTTTAccaatttgtttgtttgtttataatTCTATACCCAAAATGCACCAGCGACCGTCTGGATAGATTGTTGTACAGACACAAAACAGGATTGTCATCTTCTATTTTTCAAATtattgtctctctctctctctctctctctctctcattctttcttagcttctctctctcgctccctctcattCCTTCATTCTATCttagtttctttctctctctgtttctctctctctcattctttcttagCTTCGCTCAATCTCTACCTCCACATCTCTATTCTATTTCTTACTATCActattttctctgtgtgtgtttgtaggttCATTTAGGCAGCGAAGGATGCAGGAGGGCAATACTTATATTTTGTAAGACTTGTATAGAGGGAGAGGACTGGGGCTAGGGATGAGATGTTAATGCGTTGGTAGTATTGAGGAGGTAGCAGATGCAATGCATGGTAGGTAGGTAGAGTGCATGGTAGCAGAGTAGCTAGCATGTCCAGAGAAGCTATGAGTTTCTATCCAGAGCCATGGTCAATTCAGGATATGAattgaaattccaattcaataTTTGAAAAGTGCCACAAGTTGCACAAGGGTGACCGACATGTAGCATTTTCACTGGCAACGTATAGGTAACTgcccaaaataatggaaacacttgagtaaatgagggatgccAGGTATATTGAAGGaatgtgcttccacacaggtgtggctcctgagttaattaagcaattaacatcccatcttAGGGTAAATTATACAAAtcctgggcaggccattattttggctaccatggctatgcccccctAGGATGATAAGGgtcccccatccacagggcagaAGTGGTAACTGAACgatttgatgagcatgaaaatggTGTAAACCACAGGCAATGGCcgcacagtcaccagatctcaacccaattgaacacttatgggagattctggagcggtgcctgagacagcgttttccgtcaccatcaacaaaacgcaggttagtgttttttgtcatgaatcttgttctggaggcagttctgcagagtggtcactagctagcTGGCACAGGCACAaatcataaaatctgattttaaacctaactttAACCACACTTTTAACCttgatgcctaaccttaaattaacaCCAAAAAGCCAATTTtcactttgcagctggcctatctaaggggaaatcgctcagttctgcatCTAGGACAAGACTtatgacaataaatgtcaacctgccaacaaaacaccaaatgatggaatttcttgcAGAAGAAtagtgttgcatccctccaatagagttccagacagttctagaatctatgccaaggtgcattgaagctgttctggctcgtggcacaacgccctattaagacactatgttggtgtttcctttatttttgacAGCTCCCTGTACATGCACACATAGTGAAGTTGACAGAGTCGAAGAACGTAGAAAAAATATTGAAAGAACAGAGTCACTACAGAGTCACTACAGGGAACAGTCCTAAACGGACCAGTAAAAGAAGTGATGTTGGAGGTGTAGCTGTAAGCTGGCATTGGTAAGAGGTACGCTGCGGTAGTCCTATATCCGTTGGCTTTCACACTGTGACTACAAACCTCCCATCCCATCTTGGAGTTGTAGCGTTCTCATTTAGAAGCCATTGATACTGACTTTACCCGTCGTTTGACTTTACCCAAACTCTGTTACGTGTCATTCGTCTAAATGAAATAAGGGAATGATGTTGGTCTGTTACGTTTTTGTGCTGAAATGTTTACTGTGAGGATCAAGATCTGTCACTTCCTGTATAAGTAGCAGAGGTAGTTTGCTGAGCCTGTAACCGTGCCTGGGACCTGAAGACTCACGTTAGCTCCAAGAGCTTATAACAACAGGCAGCCACTGTAAAGCCTATGAGCAAAACGGGCCATGGATGCCGAATTTGCCCTGTGGCCCAGGCTGCTCATGGGCCACCGTAAGCTTGCTAGCTGGGTGAGATCATAGAGAAACCACTCGAAAAGATACGCTGTAAAAATAAAGATTCCACTGGGCTGTTTGTGGGAAAGTGTTGAAGCAACATTTGCTGTACTTCTTGTCCAGTGTTTTGTCTGTACCAAGCTGAACAAAAGCTGCTGTTCTTGACAAAGAAATGTAGACCTACAATTTGATGGTGTTGTGTCTTTGAGTTAATGGTGTTTCTGTTCCTGTTGAAACCAGAGTCCTTTAATATGGAGAGTTGGGCCAACTGTAGAGCTGGGCACCACATTGCTGCCTCTTGAGGGTTCAAtattgcccagtgacacgaaCGTGGCTGCCATCGAGCTCTGTGATGTCATAGTTCAGACTGCATTGGCCAAACTCTCTCTAAGGTCTCTGATTGAATCCTGCCATCAGTGAGCTCTATGTGCTGCTGGATTCTGAATCTCTAACTGACTACTTCAAGTAAGACTGGATCAGTTTTTGTCAAATTGAATTGACTTTGACTGTGCAAATGtacaatcctctctctctttctctctccgtttctttctctttctttctcaacaTTCCATCTAATTCTTCCCCTTACCCctgcccacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740859 lncRNA upstream 39648 15577484 ~ 15632085 (+) True G1520560
TU1740834 lncRNA upstream 57057 15603978 ~ 15614676 (+) True LOC110495451
TU1740865 lncRNA upstream 64915 15590725 ~ 15606818 (+) True G1520565
TU1740852 lncRNA upstream 109419 15561818 ~ 15562314 (+) True LOC110495448
TU1740847 lncRNA upstream 123344 15547947 ~ 15548389 (+) True G1520548
TU1740990 lncRNA downstream 150065 15824727 ~ 15825140 (+) True G1520677
TU1741007 lncRNA downstream 195072 15869734 ~ 15870406 (+) False G1520691
TU1741009 lncRNA downstream 195072 15869734 ~ 15870666 (+) False G1520691
TU1741006 lncRNA downstream 195117 15869779 ~ 15870406 (+) False G1520691
TU1741008 lncRNA downstream 195117 15869779 ~ 15870666 (+) True G1520691
XM_021570719.2 mRNA upstream 56518 15607483 ~ 15615215 (+) False LOC110495451
XR_005037384.1 mRNA upstream 58528 15610970 ~ 15613205 (+) False LOC110495451
XM_021570682.2 mRNA upstream 75682 15585908 ~ 15596051 (+) True LOC110495441
XM_036951985.1 mRNA upstream 108494 15554859 ~ 15563239 (+) False LOC110495448
XM_021570715.2 mRNA upstream 108494 15555952 ~ 15563239 (+) False LOC110495448
XM_036951984.1 mRNA downstream 46671 15721333 ~ 15723189 (+) True LOC110495639
XM_021570977.2 mRNA downstream 49045 15723707 ~ 15730830 (+) False LOC110495640
XM_036951951.1 mRNA downstream 49045 15723707 ~ 15730830 (+) False LOC110495640
XM_036951952.1 mRNA downstream 50770 15725432 ~ 15730830 (+) True LOC110495640
XM_036951949.1 mRNA downstream 59658 15734320 ~ 15749637 (+) True LOC110495642
TU1740022 other upstream 455489 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 771561 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 856847 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 1114387 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 1172596 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 81831 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 121690 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 244495 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 263568 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 263739 15938401 ~ 15938818 (+) True G1520748

Expression Profile