RNA id: XM_021570980.2


Basic Information

Item Value
RNA id XM_021570980.2
length 2328
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110495644
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15796262 ~ 15801788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCACCGACCAACTTTAGTGAAACGACAACAAGGTCGCTATCAGCCGGTAAGCAGAATCAGAGAGAGGTTTCAACCAACATTTCTTTGATAAAACGAACAGCTAGACTTTCATAAACATTGCCAATATGTCCAAACTACAGTTGTTGAATGTGTTCGTCACCGAGCGTTTATCAGCAGCTGCTGTGGAGATATTCGTGGTCGTGGAGAAGATTATAGCGGAGTATCAGGAAGAAATCTGCCGTTCAGCAGAGGCGAATGAACGTCTACGGAGGCTGTTGGACATGGTTAGCAAACCAGAAATAACGTTACACAGAGACTTCCAGCTACTGTCTCCTGCTGTTCCCCCTGAGCAGCAGAACTGTGAGCAGGAGTGGAGCCCCAGTCTAGAGCAGGAGGACCCAGAACCCACACAGATTAAAGAACAACAGGAGCTCAGACTCAGTCAGGAGGACTCACCTCAGCCCTCACATCTTTACCAAAACCAAATTgttggtgatggagagaggagcgCTCTACCTATCATCATAACTGAAGATATAAAAACAGAACCTGATGGAGAGGGCTACAGAGTAGCAGAACCAACCAGTGATCAGCCCCTCTCAGTTCATCCAGACTGCTCTGCTGCAGTGGAGAAGCCATATCAGTGTAAACAATGTGGCAACAGCTTCACATGTAAGGGACACTTGACCATCCATTCAAGAACACACATAGGAGTGAAATCTTATCTGTGCAAACAATGTGGCAAAAGCTTCATCCAGAAAGGTGACTTGGACAGACATACAAGGATGCACACAGGAGATAATCCATACCAGTGCAAACAATGTGGCAAAATGTTTAGCCAGAAGGGAAGCTTGACCATCCATTCAAGGATACATACAGGGGAGAGACCATATCAGTGTAAAGACTGTGGCAAAGCCTTCAACCAGAAGATAGAATTGACATTGCATATGAGAGCTCATACAGGAGAGAGACCATATATCTGTCCTGTATGCAAGAAAGGTTACATCACATTAAGCTATTTAAGACGTCATCAGCGtgttcacacaggggagaaaccttaccaGTGCAAAGAATGTTACAAATGCTTTGGTTATAAACATCGCCTAACATCACATATGAACACTCATACTAAAGGGCATAAATGATATTACTACACTGAGTGCAATAATAGCCTGAAATTAATCTGAAATGAAAACAACAAATGAATACATTGTCATTGTGAATTTCTTAATACTTCCAACTTCTGAATTATTATGTTCTGTTTTCTGGCAATTGACAACATAACAAATTTAATAATGTGTGTTGAGGGGAAATCACCAGTCAGCATCAGATTGGTAAACTGAATCTAGCGCTCAGTTTCAGGGACCTACCCTCCATGACACTGCTGGCTTCAGGAAGTCGTCACAGCTGTATCTAGCACAGAACACACTCCTGTTCGCCGTATACACAAATAACAAATGTACGCAAAAACAGTGACCTCACCTTCATCAAATACCTGTATGCGGACGACATGGCTCTGGTTGCTTGCCTGGATGGTAAATCCAGCTCAAGTTTCTCCCAGTTTTGACCTCGTGACATGTTTTGACAATAGCTTCAATGACGTCCATTTCACCAAGACTAAAGAACAATGCCTTGGTGGTAAGATGCGGAATAATGCAAGCGAACACACACTGACCATGGTGTAAAGATCCCTGATCGAGAGTGTTCTCACCTTCATCTCCACCTGGTATGGGAATTGGGATCCTCTCGTTCAGGGACAGGAGTAAACTGGCAAAAGTTGTCAGTCAGGTCAGCAAAATAGTCAGCAGCAAAACAGACCACAACTGCAAGAACTGTACACACAGAACATTACAAGGAAAGCACTCCAGGTCTTCAACGACCACGCCCGCCCACTGCATTATCCTTCCAAATGCTGCCGTCTGGTTGGAGGTGCCACTCGCACGGAAGAATGGCTGGAGAAATCCCCTCCTCAGTGACAATTCTAAATAAGATGAACTGACATGTAAATGCTTCATGTAATGTGTATGTTTTCATCCATTTAATGTAAGCCAGAGCGCCAAAGACACTTTCCCATTCTGTGCAAACTTAATGGACCAAAAGGTTTTCTAATCTCATCTTTCTAAACAACAGTAGTTCTTGTTCAATTGTTTAACAATGACATATGGGACATTTGGGCCACTATCACATCTGTACTGACAGCTGCATGTTAGAATAttgatgtagtctatcacatTTGTTTCTACTTCCAGTGTAACCCCCTAGAGTCCATTGACACATTGgtgtgtcaatctaagtaacataataaaaaatctgtcagtttaagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740884 lncRNA upstream 121600 15671733 ~ 15674662 (+) False LOC110495637
TU1740886 lncRNA upstream 121600 15671733 ~ 15674662 (+) False LOC110495637
TU1740887 lncRNA upstream 121600 15671733 ~ 15674662 (+) True LOC110495637
TU1740834 lncRNA upstream 181586 15603978 ~ 15614676 (+) True LOC110495451
TU1740865 lncRNA upstream 189444 15590725 ~ 15606818 (+) True G1520565
TU1740990 lncRNA downstream 22939 15824727 ~ 15825140 (+) True G1520677
TU1741007 lncRNA downstream 67946 15869734 ~ 15870406 (+) False G1520691
TU1741009 lncRNA downstream 67946 15869734 ~ 15870666 (+) False G1520691
TU1741006 lncRNA downstream 67991 15869779 ~ 15870406 (+) False G1520691
TU1741008 lncRNA downstream 67991 15869779 ~ 15870666 (+) True G1520691
XM_036951983.1 mRNA upstream 583 15775465 ~ 15795679 (+) False LOC110495643
XM_021570982.2 mRNA upstream 1568 15791145 ~ 15794694 (+) True LOC110495645
XM_021570979.2 mRNA upstream 12761 15775466 ~ 15783501 (+) True LOC110495643
XM_036951949.1 mRNA upstream 46625 15734320 ~ 15749637 (+) True LOC110495642
XM_021570977.2 mRNA upstream 65432 15723707 ~ 15730830 (+) False LOC110495640
XM_021570983.2 mRNA downstream 2391 15804179 ~ 15808486 (+) True LOC110495646
XR_002469459.2 mRNA downstream 15709 15817497 ~ 15820461 (+) True LOC110495647
XM_021570984.2 mRNA downstream 24060 15825848 ~ 15841645 (+) False LOC110495648
XM_021570985.2 mRNA downstream 24060 15825848 ~ 15841645 (+) True LOC110495648
XM_021570990.2 mRNA downstream 45580 15847368 ~ 15852257 (+) False LOC110495650
TU1740022 other upstream 580018 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 896090 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 981376 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 1238916 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 1297125 14498786 ~ 14499137 (+) True G1519538
TU1741071 other downstream 117369 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 136442 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 136613 15938401 ~ 15938818 (+) True G1520748
TU1741359 other downstream 663725 16465513 ~ 16468423 (+) True LOC110495674
TU1742927 other downstream 1822028 17623816 ~ 17627644 (+) False LOC110527374

Expression Profile