RNA id: XM_021570984.2


Basic Information

Item Value
RNA id XM_021570984.2
length 5267
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC110495648
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15825848 ~ 15841645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGGGCCACCGAGGCGCCTATTCCACAGGGCTCACGAGCTCGTGTGTAAAGAATTGACACAGCCAATTTGTTTCAGTGTGTGGAGAGCCTGAGTGAGGTGCGTGCTTAGAGGACCTATAAATTGTGAAGATGTGCATGGCTTAGACAGTTCGTTTTCAACACCAGACAACTGAACTCTCATTTTCAACCACGACGGACATAATACCGTATACAGATCCTGTGCGTCGTTTATACGACTTTGGTTGGACTGCAAGGTGTCGACAGGAGAATTTACCTTTCTTTCGCACATGCACAGCGACGCATGGGTGGAATGCTTCTAACGAATAAGGACTTTTATGGAGTTTCTTTCTTTACTTCGTCTTTGGATAGCTTTGGGACAGTAGAGCGCGGTTGCAGCTCCCCTTTTCCCGCGGAACTCTACCTGGATGGAAACCATGTCACCACAGCAACAGAACGAGCTGAGCCGCAGGACTTCACTCACCGGCGAGTCCAAGACCAGCACGCAACATGAACACAAGAGGagGATGAAGTCTCTGAGCCATCGTCGACAGTCCGCTCCCTCTTTGGTCATCAACAAAGCCCTGACCAGATCCAGAACTTTCTCCAGAGAGAGCTTCCTGGTTCCTGTGTGTCCAGAGACGTGCCCATTGGTCCAGTCGTTCCTGTGTCCTGATAGGGCGTTCCTCCTGCACGGCCACGTCACGCTGAAGACAGGGCTGCAGACGCAGGACAGAGACCTCTTCCTCTTCACCGACATCCTCATCATTGCCAAGTCCAaGTCTCCCACACACTTCAAGCTGAAGGCccaggtgtgtgtgggtgagatGTGGACAGCCCAGTGTATGGAGGACGTATGTGAGGGCAGCACCAACCCAGAGAGGAGCTTCGTCATGGGCTGGCCCACCTGCAACTGTGTGGTCACCTTCAGCTCTGAGGTCCAGAAGGAGAGATGGCTCTCCATGCTCAAAAGTCGAATAAAAGAGGAGAAGGAAAAGGATGATCCTAAAACCATTCCACTGAAGGTGTTTGGGAAAGGCATCGGGAGTTGTGCTCAGGTCGTCAGTAAGACCTTGGGTGTCAGTAACTCTGATTCAACCAATGAGGTTGTCCGACTCGCTCTTCAACAGTTTGGTGTCACGAGCTGTGTGAAGGACTACCAGCTGTGGGTAAGCTCCAAGAGGGACAACGCCCCTTACCCTCTCATTGGTCATGAGTTCCCTTTCAGTATCCAGATGAGTCATATGCGGGAGCCCCTGGCCCAGCCAGGCCGCAGAGACACAGTTCcacctccagacagacagagggcgATGCACCGCGACCAGGTACAGGTGGACAAACAGTGCCAGTTCATCCTAAAGACCCGATGCAGCTCCACAACAACAACGCCTGTGATTGTAGACCCAGCTCAGAAGCCCTTCAAGCGAAGGCGTTCTCTCATCAACTGGGCTTTCTGGAAAGGCTCCAATCCTAACCTCCACAGTTCCTCTacaaacctctcctctcctgcccccgGCTACCTGTTTGGCCAATCGCTGAGCACCATCTGTTGGGACAACTCCCTGCCCAAGCCCGTCATGgacatgCTGGTGTTTCTGTACAACGAGGGTCCGTTCACGCGGGGGATATTCCGACGGTCAGCGGGGGCGAGGGCGTGTCGTGAACTCAGGGACAGACTGGACTCTGGGGCTCAGGATGTCCCGCTGTCACGGGAGCACGTCTTCATCATCGCTGCTGTGTTCAAGGACTTCCTGCGGAACATTCCGGGCAGTCTGCTGTGTTCCGACCTCTATGAACAGTGGATGGATGTGATGGAGGAAGCAGAAtcggaggaggcagaggaggaggagcaggcacaggatatAACGAGGCTGATTGGTCTACTGCCCAAAGAGAACGCCCTGTTGCTACGCCACGTTGTCGCCGTGCTGCACGGTATCCAGGAAAACGCCCATGACAACCAGATGAACGCCTTCAACCTGTCTGTGTGCATTGCTCCCAGCATGCTCTGGGCTCCGGGCCCCAGCAGCCCCGAGGTGGAGGGGGAAGGTGCCAAGAAGGTGTGTGACCTGGTGAGGTATATGATAGAACACTGCCAGGAGGTCCTGGGAGAGGATGTCACCTCCGTGTTTGGAGGTCTACCCCGGAAACGTGCCGAATCggACGTGTCTTCCTTCCACCTGACCGACTCATCTTATGACAGCCTGGAGAACATGCTGAATGATGACAGCAGTGAGTCTCCATGCCTCCACACCTCACGGCGGCGCTGGAGAGCCAAGCCCCTGCAGGGCAGCCTGGACTCGGTCCTCACCCTGAGTGACTGCGACCAGGAGCAGCCCGACCTGGACACAGACCCCGACACCACAGACCCCCAATCTGGCAACCACCACCACCGTGATACGATCACACAACCTGGATCTGGCAACCTCCTCCAGCCCTCAACCCCAGCCCGAAGCAGGACCAGGAAACTCAGCCCAGCTGTGCCCCCCTCCtcctgtcccagccccccagctCCTCGGAGGGGGGGGAGGAGGTGCTCAGAGCCGGCCATAGGGTACTCTGTGGCCAGCTTCGTGGCGCGACTGGCAGGGAACGCAGACAGGCTGGGTAGCATCGATGACCTGGCTGGAGGTGGGGAGATGTTTCACAGCTTACGGAAggatggacagacacagacacacggacccacacacacaggggagtgGAATGGCAgtaagggtgtgtgtgagggtttGGGGTCACAAGGTACACAGACGCGACGCCGGGACGCAAGCTACTCCAGTCTCTCTTCGCCGCCCACCTCCCCCACCCCCACACGCTCCTCAGTGGACTCCCTGGACAGCCTCCTCTCCCACACCAGCATCCAGTCCGCTCCATTCTGGCAACCCAGGGTGGGACCCAGCGCCGCAAGATTGACTCCCTCCCCTGGTTCTCCTGCCCCTCCTGTCCCTCATggtcctcctgtccctcctggTCCTCCTGTCCCTCTAACCCCCATATCTTCCCCTACTTCAAAACATGATCTACCCATCCCCACCCCGGCTCCAGGCCAGGGGCTCAGTCCCAATATCTCCCCGCCGAAGGAGATCCCTTCCTGGGGTACGCTGAAGGGCTGCAGGGGGCTCCATCCCAACACCTGGTTGAAGAGAGGCCGCAGACTGTCGCTGTCGCAGCAGGAGGATGAGGGGGGTGTGgtggATTCCACTAGCAAGACTCTCCCCACTAGCAAGTCATGTCAGGATAAAGGAGAGCTGAAACAGTCGTCTGAGAACCCGCCCAAGTCCAGCCTGGCCAGCTGCCCCCCAAAGGCAGGAGGGTTGCAGAATCGCGGCAGGGTGACCAAGGACCGACAATCCAGTCAAGGCTCGGTGAGCCCACCATTGCGCCAGAGGTCCCAGGAGCATTTCCACTCCTGCCGCTCTCCCTGCTACCAACCCACAGACAGACCCCTCACTGTCAAAGAGCTGAGAGAGATACACAGCCGGGCCTGCGCAGCGAGCAACACAGGATATGACGTCACAAATCAGGGCAACCTTACCCCTCCCCAACATGTGTTCTATGGGCAGGGTGGACCCAGCTTGTCCCTAGCCAGGCAGAAGTCCCACTCCCAAGCCCCAGGCATGGAGGGTCTCTCCGGGGGCAGGTGTTCCCAGCGCCGGAGCTCTGAGCCTGGGGCAGCACATCTAGGCGAAGCCTTGGTTCTAGATAAGGCCTCACACCCGGAGAGGCTTCACAGAGAGGCCAAACTGGGTCAGAGGTCAAAGTCAGTGGACGGGTCCCAAGACCTGGGGCTGAAGGTGTCCTGCACGGACCAAAGCGGGGCTCCGAAGTTttgcctgtctccctctgccaccAAGGCTGTGAGGGACTATTTCTCGCCTCACACGCACAGCAATCCCCAAAGTGGTCAGCAGGTTGCGCTAGCCCTGATTCATGGGCAGAGGGAGCGGCTCAGGAGGTGTAGTGATCCCATGCTGGAGCCGGACTTTGACCAACTGCTCTTTGCTGAAGAGTCCTACGTGTGAGACCATCACTGGTTGTGAACGGTCACACTAAATGCTTCTACATACAGCTGTGAATCTACAGGTAGAGTCATTTAGGACCATAACAGAACCAAAACATAGCGCTTATGAGAATCACAGATATAACAACCTTCTGCTTATTGTGGACAAACATTCCTATACTTACAATGCACTTTGCTTTTCAGAATCGATTGGTAATAAGACTCTTCTATATTATTATAGATTCTACTAAAAGAGCTCACTGAAGTGAATGTATCATGTCCGTATTAGGAGTAGTGAGGGAAGAGTAGTTTCAGATTATGTAATGTGTCGTTTTAGATAGCAGAAGTGAACAAATGTACTTTAGGGATCAGGCTATTTGGTTGGATTACATGTGAGATTATTCACAGGGACCCTTGCAGTGAACTGCCTATGATCAGTATAAGATTACTAAAACGTTTACTTTTAAACAAAAATTCCTTACTAAACCGTGTCATATTTAGACAGTGTATGCGAGGCTGTGATTTTGCATTGACAGTATTTTGTAAATAAAAGACGATCTTGACTGCCAATGAAGCAATGttgataatgacaaagcaaagtgCTTTAAGATTACAGCTGTAGTGTTTCCTCAAAGGATTTCTCAAACTCTGTATTTCAATCTGTGCTGTATATGTGGCAGGGTGTCTGAGAGATGTTGTTCTCTATTCACTCTGTATCGCTGAAGCGTTACTGATTCTgcgatagaaatgtaaaggtcatttccgattgagctgACATACAGTATCCAGCGTTTACCGCGAATGCAGTCGCCGCTAAAGCGGGaacgttgcctttaaatttcaatcacgctcAAAAGCTGAACTTCCACGATGCGGACTGAATAGAGCCCTATGTTTGTATAGATCCGTTTGTCTGACAAGTATACATGAATTATATAATCTGTACGGTAAATTTACAGTATATGCAGTATGATTGTTAGCTTATTTTCTACATTTGAAGGTATTCATTTCATACTAATTGCTGCCAATTGTGTTATGTGCATTTTCACATAGCTTTCTACACCATAAATTGTGCTTTGTTCTCTTTTTGTATTTGTGCCAATAGGATGCTTTATAATGTTTAAAGTGTACACGCTGTATTGAGATTGTACACGCTGGCAGATGCCGTCGCTGCTTTATTAAACTGGCTACTACACTCGTTTGCTGTGTAATGCATAAGATAATCAGATCATAAAATAAAACAAACCACCTTGGCTAGTAAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740990 lncRNA upstream 708 15824727 ~ 15825140 (+) True G1520677
TU1740884 lncRNA upstream 151186 15671733 ~ 15674662 (+) False LOC110495637
TU1740886 lncRNA upstream 151186 15671733 ~ 15674662 (+) False LOC110495637
TU1740887 lncRNA upstream 151186 15671733 ~ 15674662 (+) True LOC110495637
TU1740834 lncRNA upstream 211172 15603978 ~ 15614676 (+) True LOC110495451
TU1741007 lncRNA downstream 28089 15869734 ~ 15870406 (+) False G1520691
TU1741009 lncRNA downstream 28089 15869734 ~ 15870666 (+) False G1520691
TU1741006 lncRNA downstream 28134 15869779 ~ 15870406 (+) False G1520691
TU1741008 lncRNA downstream 28134 15869779 ~ 15870666 (+) True G1520691
TU1741017 lncRNA downstream 34506 15876151 ~ 15878418 (+) True G1520697
XR_002469459.2 mRNA upstream 5387 15817497 ~ 15820461 (+) True LOC110495647
XM_021570983.2 mRNA upstream 17362 15804179 ~ 15808486 (+) True LOC110495646
XM_021570980.2 mRNA upstream 24060 15796262 ~ 15801788 (+) False LOC110495644
XM_036951983.1 mRNA upstream 30169 15775465 ~ 15795679 (+) False LOC110495643
XM_021570990.2 mRNA downstream 5723 15847368 ~ 15852257 (+) False LOC110495650
XM_021570988.2 mRNA downstream 5724 15847369 ~ 15852257 (+) False LOC110495650
XM_021570989.2 mRNA downstream 5724 15847369 ~ 15852257 (+) False LOC110495650
XM_021570987.2 mRNA downstream 5726 15847371 ~ 15852257 (+) True LOC110495650
XR_005037380.1 mRNA downstream 10999 15852644 ~ 15863544 (+) False LOC110495649
TU1740959 other upstream 9843 15756493 ~ 15816005 (+) True G1520649
TU1740883 other upstream 25967 15796352 ~ 15799881 (+) True LOC110495644
TU1740022 other upstream 609604 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 925676 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 1010962 14813982 ~ 14814886 (+) True G1519733
TU1741071 other downstream 77512 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 96585 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 96756 15938401 ~ 15938818 (+) True G1520748
TU1741359 other downstream 623868 16465513 ~ 16468423 (+) True LOC110495674
TU1742927 other downstream 1782171 17623816 ~ 17627644 (+) False LOC110527374

Expression Profile