RNA id: XR_005037382.1


Basic Information

Item Value
RNA id XR_005037382.1
length 3504
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC110495649
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15852644 ~ 15865039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAGTACGCACCCAAACATGAACAGCGTTTTCAGTTTGTCGATGTGAGGTGGGTTGCAACTAACGTGCTGTGTCGGTCTATGATGCTGCACATGCGCTGAACGGACGCCGCGGAAAACATTGAGGGGTTACCAAAGACATGGCGGCCAACATCGAGCAAATTTTTCGCGATTTCGTAGTAAATAAGATAAAAGAAATTGAAGATGAGAGTCAAGATATCATTCTGACAGATGAAGGCCATCCCAATGGTAAAACTGCAGAAGGAGCAGATGGGATCAACAACACACAAGATAAAGATGGTGTAGCCAATAAGGAAGAGGGTGCTGTCCCACAAAAGAAACATAAGAAGCACAAGAAACACAAGAAACACAAAAGCAAAAAGAAGAAACgtaaggaagagaaagagagcggcTCAGAATCAGCAGCAGACTCTGATGGAGACAAGGCAAAGACTGGGGAAGAGGATGACGGGAGATCCAAGCGGCATAAACGACATTCtgggaagaagaagaaaaaaaagcagaAGAAAGATGGTGACAAGTCCAACAGCTCATCTGGGTCGGAGTCTGAGTCGAAGCCTCAGCCTGGGAACAAGGAGAGCAAACCTCAGGATCTGCCTGATATCATCCCAAAACTAGAGGAGAAGTGTCCGGAAAAGTCCTCCTCCAGATGCTCACGGTCTCGTTCAGGCAAGCGCAGGTCCAGATCCAGGGACAAGAGAGGGAGATCCAGATCGAGGTCCGGTAGAAGACATGGCGGACACACACGTTCCAGATCACGGCACCGGAGGTCCGGGTCACATTCTAGAAGGTCTGGGTCTGCCAGGAGAGGCAGGAGAACCCGGTCAAGGTCCCTCGTGATCTTGAAGAAAGACAGACGGTCTAGATCGAGATCCAGAAGGCGATCAAAATCTAAGACGAGATCTCAGTCGAGACACCGAGAGATGATTTCAGGATCTCCCTCTCAGTCCAGAAACGACAAATCAAAATCCAGGTCTGCCTCAAGAGACAGCCAATCAGCCGAGAAGGATCCCTCTGCGGCCCTGGCTAAAGATGAGTCCGCTGTGAAAGATGAAAACGTAATGGTTCCAATCGATCCGCCAGCCCTAGCTTCCGAAAGCAGCATTGAGGGTGTCGTCAATATGGCCACCCCCACTGGAGGAGGGTGGAAGCCGATACCCTTCTTAGGGGACAACAGTAAGGGAGAGCCAGCCGTTTCCTCCCAGCCCTCTGAATGTCTGATGTCTCCACAGAAGTGCCCTATTCCTCCCGAGGTGCCTTCAGGTGAGCAGCATGAGGCCTCCACTGACCACCAGTCAACGTCAGCATCTGATCTGAACCTCAACAGCCAGCCAACTGATGAGCCAGGGGAATCGGATGGACTTGTTACTTCAGACACCTTGGATGGCTCTGTAGATTCCTTACCCCCCAAAACGGATGCTGATGGAGGGGACAAGGTGACACCTCAGGGTGAAGAGCTGCCTGCCTCACCTCAACCTAAACCACAGCCAACATCTGGAGAGGCAGAGACAACAGAGAAGGAAGGAGAATCTTCAAAGTCCAGGTCTCCTTCAaagaggaaaaagtcaaggtcaaAGTCTCCTGATCAGAAGAAACGCTCTGATGCAAAGTCCTCCAAGAAGAGGAGGTCCAGATCCAAGTCTCCAGGGAGGAAAAGGAAATCAAGATCCTCGTCGCCAAGCCGCAAGAGGAAGTCCAGGACTCCGTCTCGGAGGAAGAAGTCTCGCTCAAAGTCCGGGACGAGAAAGAAGAAATCACGGTCCAAATCCAGAACACGGAACAAGCGCTCAAAGTCTAGGTCGCCGAAAAGGAAACGGTCCAAGTCACGGTCTCCTGCTCGGAGGTCAAAGAGATCGAGGTCACGCTCTGGTTCGCGGCGGAGGGGTAGGGGTGCATTCGGCAGCCACCAGCTGAGCCAGAGGGACCGCTGGAAGCGTGAGCCAAGCCACTCCCCAGTCCTTATCCTCCGCAAGAAGAGGTCTCCGGGACGCAACAACCGCGACACCAGCAAAAGCCCGCCACGACTCACAGAGCTGGATAAAGACCAGTTACTGGAGATTGCTAAGGCTAATGCAGCCGCCATGTGTGCCAAGGCCGGGATACCCATCCCAGAGAGCCTGCGACCCAAAGCTGTCCTCCAGCTGCCTTTACCCAGCCCCAACAACCCCATGTCCTTCTCCATGCCCATGAATATGAACATGCCCATGAACATGTCTATGAACATGCCTATGAGCATGACCATGAATGCAGCTATGGCTAGCATGACAGCTGCCACAATGACTGCTGCCCTGGCCAGTATGGGATCTATGGCCTCCATGCACCAGATGGCCCCGCTCCCCAGCATCACCAACAAGCCCCCGCCAGGTCCCCCCCAGCCCAACATGGCCACCATCGAGGATGTGAAGAGGAAGGTGGCCAAGCAGGCAAACAGCATCAGCATCAAGGAGTTCACTGACaaGTGTAAGAAGATtgtggagaagggaggggagctGGCCCTCGCTGAACCCCGTATATCTGACGACGAGGACGACGGCAAACCGTTTGGACGAGCCGCCCTGAGGGAGGTCAAGGGCATCTCCTTCAGCCTCAATaaCGCATCCGTGCGTCCATCGCCGGCGTTGGCGGTTCGGAGCGAGGCGGCGTTCGCCAAGGAGTTCCCCGTGTCGTCGGGCTCCCAGCACAGGAAGAAGGAGGGCGACGGGGGAGGGGCTTACGGAGAGTGGGTGACCGTCGACAAGAAGGTGGAAAAGGCCAAGGTGGCGGCGACCAAGGCATTGGCAACGGCTGCCAAGGAAACTTCGCCTGGGGATGCGCCTTTGTCTGTGGTTTCCATGGCAACAGAGGAGCCGGCGGTCGTCAAGGAGAGTGATAGTGTGTTCCCGGAGCCGCCGCTACAGCCTGTAGACATCACCCAGGCAGTTGGTGAGAGGATGAAGGCCCAGAAGCGTCTGGCCGAGAACCCACACGACGTCAGTGCCATCTGCATGCTCAGCCGTGCTCAGGAACAGGTGGATGCATGGGCCCAGTCCAACACCATCCCTGGTCTGTTTACAGGTTCTACTGGAGCAACGGTGCTCAGCTCAGAGGAGCTGTCCAACAGCGGACCACAGGCCTGGATTAAAAAGGGTCAGTCCTTGTAGCTGTCCTTGTTGCCATGGCCACAGTCAGGCCCCcctctcatttcctgtttgatgcTGGGCCGGTGATGAGGGGCTAGgaccaGTTCTTGCGAGCAGCCCCGGTGTCGGGAGGAGTAGGGGAGTTTCTCATGAGAAAGATGGGATGGCGGACAGGGGAGGGGCTAGGGCGACACCGCGAGGGCACCGTCGAGCCAATCATCATCGACTTCAAGACCGACCGCAAAGGTCTGGTGGCTGAGGGAGAGAAGACTCAGAAGTCGGGCGGTATGGTTGTGATGAAGGATCTACTGGGTAAGCACCCGGTGTCTGCTCTGATGGAGATGTGTAACAAGAAGAAGTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740990 lncRNA upstream 27504 15824727 ~ 15825140 (+) True G1520677
TU1740884 lncRNA upstream 177982 15671733 ~ 15674662 (+) False LOC110495637
TU1740886 lncRNA upstream 177982 15671733 ~ 15674662 (+) False LOC110495637
TU1740887 lncRNA upstream 177982 15671733 ~ 15674662 (+) True LOC110495637
TU1740834 lncRNA upstream 237968 15603978 ~ 15614676 (+) True LOC110495451
TU1741007 lncRNA downstream 5723 15869734 ~ 15870406 (+) False G1520691
TU1741009 lncRNA downstream 5723 15869734 ~ 15870666 (+) False G1520691
TU1741006 lncRNA downstream 5768 15869779 ~ 15870406 (+) False G1520691
TU1741008 lncRNA downstream 5768 15869779 ~ 15870666 (+) True G1520691
TU1741017 lncRNA downstream 12140 15876151 ~ 15878418 (+) True G1520697
XM_021570990.2 mRNA upstream 387 15847368 ~ 15852257 (+) False LOC110495650
XM_021570988.2 mRNA upstream 387 15847369 ~ 15852257 (+) False LOC110495650
XM_021570989.2 mRNA upstream 387 15847369 ~ 15852257 (+) False LOC110495650
XM_021570987.2 mRNA upstream 387 15847371 ~ 15852257 (+) True LOC110495650
XM_021570985.2 mRNA upstream 10999 15825848 ~ 15841645 (+) True LOC110495648
XM_021570996.2 mRNA downstream 129602 15993613 ~ 15996859 (+) False LOC110495654
XM_036951997.1 mRNA downstream 145764 16009775 ~ 16021896 (+) False LOC110495655
XM_036951998.1 mRNA downstream 153010 16017021 ~ 16021896 (+) True LOC110495655
XM_036952000.1 mRNA downstream 183134 16047145 ~ 16060945 (+) False LOC110495658
XM_036952002.1 mRNA downstream 183135 16047146 ~ 16060945 (+) False LOC110495658
TU1740959 other upstream 36639 15756493 ~ 15816005 (+) True G1520649
TU1740883 other upstream 52763 15796352 ~ 15799881 (+) True LOC110495644
TU1740022 other upstream 636400 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 952472 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 1037758 14813982 ~ 14814886 (+) True G1519733
TU1741071 other downstream 55146 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 74219 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 74390 15938401 ~ 15938818 (+) True G1520748
TU1741359 other downstream 601502 16465513 ~ 16468423 (+) True LOC110495674
TU1742927 other downstream 1759805 17623816 ~ 17627644 (+) False LOC110527374

Expression Profile