RNA id: XM_021571581.2


Basic Information

Item Value
RNA id XM_021571581.2
length 1743
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110495992
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30911827 ~ 30955199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGCCATGTAAGGCAAGACAGTAGGTTCCCATGCTACAGTAGATTCCCATACTGAGTTTCTCACACACCGATAGACACACAGTCGCAACAGTCAGATCATCGTCAGGAAGGCCCACGGACAACTGCTCTGATACAGTCACAGCCACAGTCAAACAGTGAATACCAGTCAACCAGTGAATACCAGACTAGCCAGAGGCTAAATCTGATCCGACCTTCGGGAAGAGAAAGTAGAGGTCCTTAAGGTGTGTATGAGCAAGTTTAAGCCTGTGTGCATTGGTGTGTATGTGATTTCAGAGCTTCCCTTGACTAACAGAATACCCCAGCTCTATTGTACAAGTGTACCTCGAGTCCCACAAACAGAGAAGGAAAACACCAGCAGTGTCAAGATGCTGACAGACGAGGTGTCTCAGATACAGGAGgTTCGGTACTGTCTGAAGACCTTGAGGGAACAGATGGCCACCAGACAGAATAACAAGGTACAATGCCTTCAGgagTTTCCAGCCAATGGTTACAAAGTCAGTGTCACCCTGCCTACCAACCCAGCAATTGTCACCAATTGTAAAATTGTTGGGACTGAGTCAGAAACAAATGTCAGGGAGAATTCAGAGGACAGTGCAAAGGTAAGGGAGGTGAGCAAGCGCCTGTATGCCCAGCTGAAGGAGTCAGAGAAGAGAcacaaggaggagagagacagaatgcaGGCTGAAAGCGATGAGTTCAGCCGGCGCCTCGACGAGCAGTCAAAGCACCTGcagtgggtggagggggaggCGGGGGAGCGAGGTCAGAAGGTGGAGGAGTTGCAGAGGCTGCTGGGGGGCATGGAGCTGGAGGGTGCTGTCCTGAGGGGCAAAATAGCCACCAGTGAGGCTGAACTGCTGCAGCTGAGAGCAGCCAAGGAGGGGGTGCAGGAGAAAAAGAAGAGAACTGAGGAGCTGGAGAAGGAGCTGGCTGTCCTGAAGGAGAAAATCCATCACCTGGACGACATGCTGAAGAGCCAGCAGAGGAAGGTCCGCCACATGATCGAgcagCTGCAGAACTCACGGACAgtaatacaggagagagagagagtgatcagggATCTAGAGGAGAAGGTGGCTTTTCTGGAAGCTGAGaacACAGAGATGCGTGACCAGATAGAGTACTTCCTGGAGGGTCAGAAGCCTGCTTCTCCGCCCACCAAAGAATGCAAACCCACTCCCCAGATTACCTACAGGTGACAACAACACCTTCCTGTCTCTTATCTCTATAGGGccggtttcccggacacagatcaAACCTATTCCAGGACTAAAAAGCTATTGTAATGGAGATTTTTCATTgagtcaaaaaaatatatatatatatatatatatatatatatatctttacaCAAAAATCAATTCAATTAATGTTTGGTTATCTTCATGAACAACACAGCAGCAACACAGTATAATGTTCCAGGATAGAAATGAGGGCCAAGGAAGTTGGTATatttctgttcttttgcccacCTTCATCAATGCACGGAAATAAGTCACTTCCTTCAATCTGAGTCATCGAGATCAAGTCCTGAGCAGAGGGAGATAATGAtcaagagagatggatagaggaagtGATAAAATGAGAGAGACagctggttggtgtgtgtgtgtatatacagttgaatttggaagtttacatatacttaggttggagtcattaaaagtcatttttcaatcactccacaaatttcttgttaacaaattatagttttggcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759984 lncRNA downstream 870 30909411 ~ 30911711 (-) True G1537696
TU1759988 lncRNA downstream 6727 30905560 ~ 30905854 (-) True G1537700
TU1759974 lncRNA downstream 20533 30891768 ~ 30892048 (-) True G1537686
TU1759893 lncRNA downstream 126371 30784937 ~ 30786210 (-) True G1537617
TU1759907 lncRNA downstream 190908 30721403 ~ 30721673 (-) True G1537631
TU1760036 lncRNA upstream 69266 31022634 ~ 31023078 (-) True G1537743
TU1760037 lncRNA upstream 73265 31026633 ~ 31026865 (-) True G1537744
TU1760038 lncRNA upstream 75005 31028373 ~ 31028628 (-) False G1537745
TU1760040 lncRNA upstream 75536 31028904 ~ 31029152 (-) True G1537745
TU1760043 lncRNA upstream 77426 31030794 ~ 31031210 (-) True G1537747
XM_036952485.1 mRNA downstream 15706 30803183 ~ 30896875 (-) True ubap2l
XM_021571570.2 mRNA downstream 21655 30803183 ~ 30890926 (-) False ubap2l
XM_036952486.1 mRNA upstream 5806 30959174 ~ 31005844 (-) False cgnb
XM_021571592.2 mRNA upstream 5806 30959174 ~ 31005856 (-) False cgnb
XM_021571593.2 mRNA upstream 5806 30959174 ~ 31005856 (-) True cgnb
XM_021571594.2 mRNA upstream 55388 31008756 ~ 31014201 (-) False LOC110495994
XM_021571595.2 mRNA upstream 55388 31008756 ~ 31014201 (-) False LOC110495994
TU1759310 other downstream 309189 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 387208 30519892 ~ 30525373 (-) True G1537022
TU1758870 other downstream 627819 30284372 ~ 30284762 (-) True G1536703
TU1756202 other downstream 2559963 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 2875965 28034964 ~ 28036616 (-) False LOC110495955
TU1760029 other upstream 58510 31011878 ~ 31014176 (-) True LOC110495994
TU1760774 other upstream 562743 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 732384 31685752 ~ 31692671 (-) True LOC100136047
TU1760970 other upstream 761138 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 1103943 32057311 ~ 32058785 (-) True atp5if1a

Expression Profile