RNA id: XM_036952743.1


Basic Information

Item Value
RNA id XM_036952743.1
length 6482
RNA type mRNA
GC content 0.57
exon number 42
gene id LOC110496200
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39269584 ~ 39295941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatctctttgtgtgtgtgtgcgcgggtgTTTAATGCGAGAGAGGGAGACGGCGACGTCGTGTGCATCGCCAGGCAACATAAGACAAATACTGCATTTTAATTATTggaactaacgttagctagctattgtAACCCAAAATAGAAAAACTGTTGAAAGAAAGGCAAACGTTTCCTTTCGTTGTTTCTGTTTTCAAACAGTGGAACCATTCAACTTGACTCTGGAGGCAACACGGAATTAAACTTTTTTTAAGTTAGCTAACTAAATTTTAAAGTTAGCTAGCATTATGTCTGGAAGCGAGGACGATAGGGATGATTTTGGAGCCCCAGAGGACCGGTCTCTAATGCAAGatgaggaagaggagatgtCAGAGAATGAGGCCCCgaaggtgaagaagaagaagGCCAAAAAGAGCCGGGAGAACAAAAGCAGCAAGAGGCGGACCTCTCGCAGAGAGGATGTGCCAATGAGCTCCCCTGAGCCCATGGAGACCCCCGAGGTGGACAGGGACGAGGAGCGAGCGGCGCCCCGCTCTGACAGCGAGGGCAGCGACTACAACccggggaagaagaagaagaagaacagggGGAGCACCtccaaggagaagaagaggagcagCACCAGCACTGATAGAAACGGCGGAGGAAAGGACAAGAGGAAGGACCCTGAAcccgaggaagaggaggatgaggacgaCGACGACGATAGCTTGGAGCCTAAGACGTCGTCCCAGCTCCTGGATGACTGGGGAATGGAGGACATTGACCACGTCTTCAGCGACGAGGACTACCGCTCCCTCACCAACTACAAGGCCTTCAGTCAATATGTCAGaCCGCTCATCGCGGCCAAGAACCCCAAGATTGCCGTGTCCAAGATGATGATGGTACTGGGTGCCAAGTGGCGTGAGTTTAGCACCAACAATCCCCTGAGAGGCTCCGCCGCCGCTACTGCAGCCCTGGCCGCCGCCAACGTGTCTGCCGCCGTGGAGAGCATGGTGGCGGAGGTCGCTCCCACCCCGGTCGCCGAGCCCCAGCCACCGGTCGCCCCGCCTCTGAAAaaggccaagaccaaagaggGCAAAGGTCCTAATGCTCGTAAGAAGTCCAGGCCCACCCCCAAGCCCGCAGAGAAGAAGAAAGTGGCTACAAAGAAGGTAGCTCCGCTCAAGATCAAACTAGGAGGCTTCAACAGCAAGAGGAAACGCTCCTCGAGTGAAGAGGATGAGCCTGACGTCGAGAGTGACTTTGACGACGCCAGCATGAACAGCGTGTCCGTGTCGGACGGCTCCAACAGCCGCAGCAGCCGATCCAAGAAGCCCAAGAGCAAGCCCAAGAAGAAGAAGGGTCTGTactctgcagTCGAGGAGGACGGTGACGGTTATGAGACGGACCACCAGGACTACTGTGAGGTGTGCCAGCAGGGAGGGGAGATCATTCTGTGCGACACCTGTCCCCGGGCCTACCACATGGTGTGCCTGGACCCCGACATGGAGAACGCCCCAGAGGGCACCTGGAGCTGCCCACACTGCGAGAAGGAGGGCAAACAGTGGGAGGCGCGGGAGGAGGGctcagaagaagaggaggaggaggtggaggcagaGCCGGAGGAGGACGACCACCACATGGAGTTCTGCAGGGTGTGTAAGGATGGTGGCGAGCTGCTCTGCTGCGACTCCTGTCCATCCTCCTATCACATCCACTGTCTCAACCCGCCCCTGCCTGAGATCCCCAACGGAGAGTGGATCTGCCCACGCTGCACTTGTCCACCCATGAAGGGCAAGGTGCAGAAGATTCTGACGTGGCGCTGGGGCGACCCCCCTCCGCCCACGCCCATCCCCCGCCCCCCAGACCTCCCGGCTGACCAGCCAGACCCCGCCCCTCTGGCCGGGCGCCCTGAGAGGGAGTTCTTCGCCAAGTGGAGCAACATGTCCTACTGGCACTGCTCCTGGGTGTCTGAGCTGcagTTGGAGCTGCACTGTCAGGTGATGTTCAGGAACTACCAGAGGAAGAACGACATGGACGAGCCGCCTTCAGTAGACTTTGGCGAGGGCGACGAGGAAAAGAGCACGAAGAGGAAGGCCAAGGACCCGCTCTACGCCAAGATGGAGGAGAAGTACTACCGCTTTGGCATCAAGATCGCCTGGATGATGATCCACCGCATACTCAACCACAGTCAGGACAAGAAGAATAACGTACACTACCTCATCAAGTGGAAAGACCTGGCCTACGACCAAGCCACCTGGGAGGCTGAGGACATGGACATCCCAGAGTTTGACGTCTTCAGACAGCAGTACTGGAACCACAGGGAGCTGATGATGGGCGACGAGGGTAAACCAGGGAAGAAGATCAAGGTGAAAGGCAAGACGAAGAGGATGGACCGGCCTCCTGAGAATCCTGTCGTTGATCCCACCATCAAGTTTGAGCGGCAGCCTGATTACCTGGACAGTACGGGGGGCAACCTGCACCCCTACCAGCTGGAGGGTCTCAACTGGCTGCGTTTCTCCTGGGCACAGGGCACAGACACTATCCTGGCTGACGAGATGGGACTGGGCAAGACTGTGCAGACTGCCGTGTTCCTCTACTCACTCTacaaagagGGTCACTCCAAGGGCCCGTTCCTGGTGAGCGCCCCCCTGTCTACCATCATTAACTGGGAAAGAGAGTTTGAGATGTGGGCCCCGGACATGTACGTGGTGACCTACGTAGGAGACAAGGACAGCAGAGCCGTCATCCGAGAGAACGAGTTCTCCTTCGAGAACAACGCCATCCGCGGAGGGAAGAGGGCTTCTAAGATGAAGAAAGACTCATCAGTGAAGTTCCATGTGCTGCTGACGTCCTATGAGTTGATCACCATCGACATGGCCATCCTAGGTTCCATAGATTGGGCCTGTCTGGTGGTCGATGAGGCCCACAGGCTCAAAAACAACCAGTCCAAGttCTTCAGAGTGCTGAACAACTATCCTCTCCAGCACAAGCTGCTACTGACCGGTACACCTCTACAGAACAACCTGGAAGAGTTGTTCCACCTCCTCAACTTCCTCACGCCAGAGagattcagtaACCTGGAGGGGTTCCTGGAAGAGTTTGCTGACATCGCCAAAGAGGACCAGATCAAGAAGCTGCACGACATGCTGGGACCCCACATGCTCAGGAGACTGAAGGCTGACGTCTTCAAACACATGCCCTCCAAGACGGAGCTCATCGTCAGGGTGGAGCTCAGCCCCATGCAGAAGAAGTACTACAAATTCATCCTCACCCGTAACTTTGAGGCCCTGAACACGCGCAGTGGTGGAAATCAAGTATCCCTACTCAACGTGGTGATGGACCTCAAGAAGTGCTGCAATCACCCCTACCTCTTCCCTGTGGCTGCCATGGAAGCCCCAAAGATGCCCAATGGGATGTACGACGGTAGCGCCCTCACTAAGTCTGCCGGGAAACTGACGCTAATGCAGAAGATGATGAGGAAGCTGAAAGACGGCGGGCACAGAGTACTCATCTTCTCTCAGATGACCAAGATGCTGGACCTGCTGGAGGACTTCCTGGAGAACGAGGGCTACAAGTACGAGCGTATCGACGGCAGCATCACCGGGGGCATGAGACAGGAGGCCATCGACAGATTCAATGCTCCTGGAGCGCTGCAGTTTGCCTTCCTGCTGTCGACGAGAGCTGGAGGTCTGGGTATCAACCTGGCCACCGCCGACACCGTCATCATCTACGACTCCGACTGGAACCCCCACAACGACATCCAGGCGTTCAGCAGAGCTCACCGTATTGGACAGAACAAGAAGGTGATGATCTACCGCTTCGTCACAAAGGCCTCTGTGGAGGAGAGGATCACTCAGGTAGCCAAGAAGAAGATGATGTTGACCCACCTGGTGGTGCGTCCTGGTCTGGGCTCCAAGACGGGCTCCATGTCCAAACAGGAGCTGGACGACATCCTCAAGTTCGGCACGGAGGAGCTGTTCAAGGACGAGCTTGGAAAGGGGGACAAAGAAGCAGGTTACTGGAAGCGTGTTGCAGGTGAAAACAAGGAGGAGGACAGCCAGGTGATCCACTACGATGACATGGCAGTGGACAGGCTGCTGGACAGGAACCAGGAGTCCGAAACCCCGGAGGAAACGGAGATCGGGAGCATGAACGAGTACCTCGGCTCCTTCAAGGTGGCCCAGTACGTGGTCAAGGACGAGGAGGAGGCGGAGGAGGAAGTGCAGAGGGAGATCATCAAGCAGGAGGAGAGTGTCGACCCAGACTACTGGGAGAAGCTGCTCAGGCACCACTatgagcagcagcaggaggaccTGGCCCGCAACCTGGGCAAGGGCAAGCGCATCCGCAAGCAGGTCAACTACAACGACGGCTCCCAGGAGGACCGAGATTGGCAGGATGACCAATCGGACAACAACTCGGACTACTCTGTGGCCTCCGAGGAGGGTGACGAGGACTTTGATGAGCGGGCAGAAGCCAACTCTCGCAGACCCAACAGGAAAGGCATGCGGGGCGACCGGGACAAGCCACTGCCCCCCCTGCTGGCCAGAGTGGGAGGCAACATTGAGGTGTTGGGCTTCAACGTTCGCCAGAGGAAGGCCTTCCTGAATGCAGTGATGCGTTATGGGATGCCTCCTCAGGACGCCTTCACCACCCAGTGGCTGGTCAGAGACCTGCGCGGGAAATCTGAGAAAGAGTTCAAggcGTATGTCTCCCTCTTCATGAGGCACCTGTGCGAGCCCGGCGCCGACGGAGCCGAGACCTTCGCCGACGGCGTCCCCCGCGAAGGGTTGTCGCGGCAACACGTACTCACCCGCATCGGTGTGATGTCGCTGATCCGCAAGAAGGTCCAGGAGTTTGAGCACGTCAACGGCCAGTGGTCCATGCCCTGGATGATGGAGCTGGAGGAGAGTAAAAAGGCTGCGGCCGCTGCAGCTGGAGCCCGCCCCGACTCCCCAGGGAAGACCCCCTCCACGGGCACGCCTGCAGACACGCAGCCCAACACGCCCGCCACAGCCCCCAAAACTCCCTCCACTGGCACACCCGCAGACACGCAACCCAACACGCCTGCCCCAGCAGACGATCCTTCGAAGACGGAGGACGCCGTGAAGGATggcgagaaagaggagaagaaagatggcgaggtggagaaggaggagtcCAGAAAGACGGAAGACCGAGAGGTAAATGCGATCCCCGATAACGAGGAGAAGACTCCTTCCCCTGAACCGAAAGAGAAAGATGAAGGAGAGCCCATGGAAACAGACAAGCCTACCAACGGAGAGGCGGAGAAGGACGGCGAGACTGCAGAGGAGACTGCtccgggaggagaggagaccaagTCTCCAGCAGCAGAGGCCAAGATGGACGTGTCCGAGGTCAAATCGGAAGACTCCGAGGCCAAAGCAAAAGAGAAGACGGAGAAGATGGATACCACTCCTGCCTCAGAGGAAAAGAAAGAGCAAAAGGAGGAGAAGGATGGCGTGAAGGCGGAGGAGCTGGCCAAGCTGCAGAACGGGGACAGTGTGAAGGAGGGAGCGGCGGCCGGAGTCAGTGAGGAGAAGAAGAAAGCCAAGACGAGATTCATGTTCAACATCGCCGACGGAGGATTCACAGAGCTGCACTCCTTGTGGCAGAACGAGGAGAGGGCCGCCACCGTCACCAAGAAGACCAACGAGATTTGGCATCGTCGCCATGACTACTGGCTTCTGGCTGGCATCATACAACACGGCTACGCGCGTTGGCAGGACATCCAGAACGACGTGAAGTTCGCCATCCTCAACGAGCCCTTCAAGGCTGAAATGAACCGAGGCAACTTCCTGGAGATAAAAAACAAGTTTCTGGCCAGGAGGTTCAAGCTGCTGGAGCAGGCCCTGGTGATCGAGGAGCAGCTGCGCCGGGCGGCCTACCTCAACATGTCGGAGGACCCTTCCCACCCCTCCATGGCCCTCAACACGCGCTTCAGCGAGGTGGAGTGTCTGGCCGAGTCCCACCAACACCTCAGCAAGGAGTCCATGTCGGGGAACAAGCCCGCCAACGCCGTCCTGCACAAAGTGCTGAAACAGCTGGAGGAGCTTCTCAGTGACATGAAAGCAGACGTGACCCGTCTCCCGGCAACCATCGCCCGGATACCCCCGGTCGCAGTGAGACTCCAGATGTCCGAGAGGAACATCCTCAGCCGCCTGGCCAGCAGAGGCCCCGAACCACAGCCTCAACAACCACAGCTGTCACAACAGTAGCCTGGCTTAGCCCCCTTGAACCTCACCACCTCTACATTCCTGATCGGCACAGCAGACGATGATGCGCCCAAGCTTGAAACCACGGCCCTTTATATAATATGGACTTGCAGCGTTCCTACAGGCTGACTCCTGGACACTGTGGAAATAATAGCTATTTTaatttttccttttgttttgacTTTATTAATATTATTGATATAATGTTATTATGATGGTTTTTTTGGGacctaaataaaaatgtaataaaggtttttgtttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770257 lncRNA downstream 766 39268616 ~ 39268818 (-) True G1547041
TU1770255 lncRNA downstream 5330 39263873 ~ 39264254 (-) True G1547039
TU1770254 lncRNA downstream 6405 39262921 ~ 39263179 (-) True G1547038
TU1770163 lncRNA downstream 31539 39237654 ~ 39238045 (-) True LOC110496197
TU1770144 lncRNA downstream 36504 39232559 ~ 39233080 (-) True G1546933
TU1770270 lncRNA upstream 78635 39374576 ~ 39384675 (-) False G1547052
TU1770271 lncRNA upstream 78635 39374576 ~ 39382376 (-) True G1547052
TU1770322 lncRNA upstream 117984 39413925 ~ 39414131 (-) True G1547103
TU1770323 lncRNA upstream 118232 39414173 ~ 39414433 (-) True G1547104
TU1770326 lncRNA upstream 120609 39416550 ~ 39416805 (-) True G1547107
XM_021571958.2 mRNA downstream 7128 39247198 ~ 39262456 (-) True LOC110496198
XM_036952730.1 mRNA downstream 8211 39247198 ~ 39261373 (-) False LOC110496198
XM_021571957.2 mRNA downstream 24529 39237986 ~ 39245055 (-) False LOC110496197
XM_021571955.2 mRNA downstream 24530 39233121 ~ 39245054 (-) False LOC110496197
XM_021571941.2 mRNA downstream 122989 39116591 ~ 39146595 (-) True LOC110496190
XM_021571968.2 mRNA upstream 12878 39308819 ~ 39326763 (-) False LOC110496203
XM_021571967.2 mRNA upstream 12878 39308819 ~ 39326834 (-) False LOC110496203
XM_021571966.2 mRNA upstream 12879 39308820 ~ 39327038 (-) False LOC110496203
XM_021571969.2 mRNA upstream 12879 39308820 ~ 39327038 (-) True LOC110496203
XM_021571965.2 mRNA upstream 62457 39358398 ~ 39372505 (-) True LOC110496202
TU1769526 other downstream 481783 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 495900 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 593555 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 706266 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1055535 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 329834 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 346914 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 346914 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 388846 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 1090029 40385970 ~ 40391883 (-) True G1548367