RNA id: XM_021571967.2



Basic Information


Item Value
RNA id XM_021571967.2
length 1946
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110496203
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39308819 ~ 39327038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCGAAACTTTTGCAATCTAAGTCTGATTTGAGATAAATCGTGAAATGTATATTATGTAGAAAGAGTACATATTTACATTTGgaacaacttagtgtatgtatttatttttaaacaacggcattagcagtTGACACCTAGCTAACCAGCTTGCTAAGAAGTGTTGTTAGCTTGTTAGCTGCTAAGAACGTTAGCtatcttttgtttgttgtttttaacTAGTTAACGTTACGTGCTATGTGTCTACATAGCAGCTTGGGAAAATAGCATTCGTTTTTGTTTACTTTTActtcattgtttttttttaaatgacatggcACTGAAAATGATTGAGGCGAAACGGTTTTACAGGCCTCGTCTGggatttagctagctaacaagctaacgttagcctagCGACCTATGATAGatGCAGACCATAAAGTGTGTGGTAGTGGGTGACGGTGCAGTGGGAAAGACCTGCCTGTTGATCTCCTACACCACCAACAAGTTCCCCTCGGAATACGTCCCCACGGTGTTTGATAACTATGCAGTGACAGTGATGATCGGAGGGGAGCCCTACACTCTGGGGCTGTTCGATACAGCAGGTCAGGAGGACTATGACAGACTGCGACCACTCAGCTACCCTCAGACAGATGTCTTCCTGGTGTGCTTCTCTGTCGTATCACCTTCCTCTTTTGAGAACGTCCGTGAGAAGTGGGTCCCAGAGATCTCCCACCACTGTCCGCGTACACCCTTCCTGCTGGTGGGCACCCAGATGGACCTGAGGGACGACAGCAACACAGTGGAGAAGCTGGCTAAGAACAAGCAGCGGCCCCTGGCCCCTGAGAGCGGAGACAAGCTGTGCCGGGACCTCCGGGCCGTCAAATACGTTGAGTGCTCCGCCCtcacccagcgagGTCTGAAGAACGTGTTTGATGAGGCCATCTTGGCCGCGCTGGAGCCGCCAGAGACCAAGCCCAAGAAACGCTGCGCACTCttataaaatattttaaattgggCCAAAGAgccaggagaaagagacaggcgGACACGGAGAACAGATAAAGCTGGGAAGGGTGtaatgggagggagaaagagaggacgaGTGAGACATTTGTTTAATAGTGCCTTCAGCGATACAGGTGGGGAGGGGCGACGTTGCGTGGATAGGTAACAGAGACCTAGAAATACATCCTAATATGTAATAGAATGTATATCTATGTTTCTTGTAACAAGCTGATCAATTCTCTTCCAGACCAGAAAAGTCCTTCTTAAAAGGAGACCGACAGAGCAATATAGGGAAGAGACAAGGTTTTGAAACCTCTATTGCCTTAAAGTTACAGTACAAACAAAATAAGTTAGACAAAAGGAGGAAGAGACCGTGTGGAGTTTATTTTGTGTTTGATGATACTTAAAAACTGACTGGAAAAATGTGCTTAATCTGTGCAATCTAGACGCACACAGGCGCCAGTGCTTTACTCCCTTCAACCCACAACTGAACTCTTCTTCTTCACACACTATCTGACATCACTGCTCCCATGGAAACTACAAGCGCTTTTTCTTCCTCTTGGGATTTCACTGCCCCCTAACATGAACTGAATTTCCACTTGCTTCCTTTTTTTGACATTTTATTGTTTTAGAGATGATGGTATATTAATGACGATAATAAGAGTATTATTTTTTTGCCCCTTTATTTCCGGGGACACCCCTAGTGGTTAGCGGTTTGGAcaattgttttttaaaaatgtgttttaaaaaaaaaaaattatggttGTGTGCCAATGTGTTGAGTGTCACTGGTTTCATTTGACATAACAATCATAATATGCCTCTAATGACTACGTAGCTGGTTGTGATGTCAGTAGTAATAACAGCAAATAGCAATAATGGTTATGAGTGACAGTAATAGCTGTATTGACGCATCATCCAGTtgtttgaaataaataaaaaataacttgaAAATGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1770257 lncRNA downstream 40001 39268616 ~ 39268818 (-) True G1547041
TU1770255 lncRNA downstream 44565 39263873 ~ 39264254 (-) True G1547039
TU1770254 lncRNA downstream 45640 39262921 ~ 39263179 (-) True G1547038
TU1770163 lncRNA downstream 70774 39237654 ~ 39238045 (-) True LOC110496197
TU1770144 lncRNA downstream 75739 39232559 ~ 39233080 (-) True G1546933
TU1770270 lncRNA upstream 47742 39374576 ~ 39384675 (-) False G1547052
TU1770271 lncRNA upstream 47742 39374576 ~ 39382376 (-) True G1547052
TU1770322 lncRNA upstream 87091 39413925 ~ 39414131 (-) True G1547103
TU1770323 lncRNA upstream 87339 39414173 ~ 39414433 (-) True G1547104
TU1770326 lncRNA upstream 89716 39416550 ~ 39416805 (-) True G1547107
XM_036952738.1 mRNA downstream 12878 39269584 ~ 39295941 (-) False LOC110496200
XM_021571965.2 mRNA upstream 31564 39358398 ~ 39372505 (-) True LOC110496202
XM_021571970.2 mRNA upstream 49609 39376443 ~ 39383490 (-) True LOC110496204
XM_021571971.2 mRNA upstream 62381 39389215 ~ 39413466 (-) True LOC110496205
XM_021571973.2 mRNA upstream 106951 39433785 ~ 39452164 (-) False LOC110496206
XR_005037469.1 mRNA upstream 106951 39433785 ~ 39452164 (-) True LOC110496206
TU1769526 other downstream 521018 38776284 ~ 38787801 (-) True G1546396
TU1769511 other downstream 535135 38768097 ~ 38773684 (-) True G1546385
TU1769487 other downstream 632790 38674441 ~ 38676029 (-) True LOC110496175
TU1769405 other downstream 745501 38559649 ~ 38563318 (-) True LOC110496167
TU1769139 other downstream 1094770 38165250 ~ 38214049 (-) True G1546053
TU1770682 other upstream 298941 39625775 ~ 39631098 (-) True LOC110496208
TU1770674 other upstream 316021 39642855 ~ 39646533 (-) False LOC110496816
TU1770675 other upstream 316021 39642855 ~ 39648014 (-) False LOC110496816
TU1770684 other upstream 357953 39684787 ~ 39688681 (-) True LOC110496816
TU1771745 other upstream 1059136 40385970 ~ 40391883 (-) True G1548367

Expression Profile