RNA id: XM_036952770.1


Basic Information

Item Value
RNA id XM_036952770.1
length 4828
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110496210
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 39755539 ~ 39825088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAGTCACGCGCAAATATGCAACCATAGCTTGATAGTAGGAAGGACACCGCCAAAACCAAAGCTTTCGATAGATATTTGTATTTTCTCACGAATGTCGATAACCCAGATATCAGGATGTCAAAACCAGCAGAGGATGAGAAGCCTGGGGCAGACTTTCCAGGGGAGAGCACAGACTCTGAGAGGAACAGTCCTGATGCCAATGATCAGGTTCAGCCAATGAAAACGAGTCCCTTCAGTCTTTCTCCTACCTTGAGCAGCATCAAGAGTAAAAGTGAGGCAGTACCTGAGATGATCTCCACCCATGTGCCGCCTCCTTCCCAGCAGCAGACGCCTCACCCTCACACACAACTCATGTTGGCAGGGAGTCAGCTGGCAGGGCTGGCTGCCCTCTTGCCTGCGCAGCAGCAGCTGTTGCTTCAGCAGGCCCAGGCTCAGCTCCTGGCCGCTGCGGTGCAGCAGTCCAACGCGGCTCATGCTGCTCATGCCGCTCACGCAGCCGCCCAAGCcaatcagcagcagcagcaacaacagctgaCCAAACAGGAGCAAGCCCCACCCCAGCTCACCCTCTCTCAGCCTATCCAGCTCACCGCCCAGGATATCCAGCAGCTGTTGCAGCTGCAGCAGTTAGTCCTGATGCCCGGCCACCACCTGCAGTCTCCTCAGTTCCTCCTGCCTCAGGCCCAGGGACAACAGGGGCAGCAGGGTAAGTGGGACCTACTAAGTTTGCTCTCGACACCTAATTTAATTCCGCTACCTCAACATCAGCAAAGCCAGGGGAGTCTTCTAACTATTCCACCCAGGCTGGGACTGCAAGCACAGCGTCGCCATGGTGATGGCCTCTCATCTTTACAGAGGGACAAGAGCGGGGATGTCGGGGTGACCTCCGGGGCCTCGGCAGCCCCCATGACCTCAGTGACCTCTGGCCCTCACGGCGAGGAGCCCAGTGACCtggaggagctggagcagttcgCCCGCACCTTCAAACAGAGACGCATCAAACTGGGCTTCACACAGGGTGACGTAGGCATGGCGATGGGGAAACTGTATGGGAATGACTTCAGCCAGACCACCATCTCTCGCTTCGAGGCCCTAAACCTGAGCTTTAAGAACATGTGCAAGCTCAAGCCTCTGCTTGAGAAGTGGCTAAACGATGCGGAGACCATGGCGATAGACAGCATGCTTCCCAGCCcgaactctctctcctcccccatgaTGGGGTTTGAGGGCATGCCGGGGCGTCGCAGGAAGAAACGCACCAGCATCGAGACCAACGTCCGCGTGGCCTTAGAGCGCAATTTCATCTTGAACCAGAAGCCTAACTCAGAGGAGATTCTCCTGATGGGCCAGCAGCTcaacatggagaaggaggtgatTCGGGTCTGGTTCTGCAACCGGCGCCAGAAAGAGAAGCGCATCAACCCTTGCAGTGCCACCCCTCCCCTGCCCAGCCAGCCCCCCTCCATGACGCACAAAACCCCCTGCTACAGCCCGCACATGgtgtccAGTCAGGGGCTGCACCAGGCTGCCACCAGCCTCAGCACAACAGTGACCAGTCCATTACCCTCGGTGACCTGCCCTCTGACCCACTGTGGCTCTGCATCCACCagctccaccccctcctctaGGACTCCGCCTCCACACAGCACAGCCAGCCCCGCTCCTTCCACCCTCAGTACCCACAGCCTGAACGCTGGGAACACAATGATGGGAGTAAGCACAGGGATGAACCAGGCTCTCGTCAGCAGCAATCACCTGGCCACAATGCAAGCTCTGGCTGCCAGTGGTGGGCAGCTGCCCATTTCCAGTCTTGAGGCCAGAGGTCAGATGATCCTGGGCGGGGCGGGGGTTCGCCCCTCCCTATTCCTCAACCGCCACACCCTCCTGCCTATGGCGTCCCACCAAGCCGGCGTGGGTTTGGTCGGCGGTCCCAGGGGAGCCTCTCCACCCCCCGGCGCCAGTGGCATGGACGTCGACTCCTGCTCTGCCTCTCCCTGCTCCAGCCCCGCCTCCTTCGGCTCGTTCAGCGAAGCCTCACCGCCGCCGCTTGGCGGGGCCATGGCCGAGTGACGACGACACAACCCAAAGGATCCTatcagaaggaggaggaggagttttaGTGGAGCTTTACAGAAACACCTCACCTTTCAACCaaagccatctctctctccctccatttgtcgcctcctctcactctcccggAGTCTTTCAAAGCCAAAAAAAAATACACAGATtgaaagaggaagaagagagcgaggaagaatggagaggaggagagaacaggagaacgGTGGAGATTtaaaccaaaaaatatatatatctatacagtTGGAGAGGTGGCATTGTGGAACACAGTGAATGCTAATGTTCATTTACTCCTTTCTCTGGAAAAGAACAAATGAGCTGAAAAACCTGATGAAAAAGAGGGCAGGGATGAGAACTGAACtaagactgagagagagatgggtggcaAGGACAggaaaagaaggaaagaaaagacTTTCAACAAGCTTCAGCAGATGGATGGAAAGAGAACCACATTTTTAAAAAACCTACAGGGGaaaaacacacaaagacaaaaaTGACAAACATGCCAAAATCTCCAAAACCGAAATACCAAAAACTGAAACCAAAAAAACGGAGAGAAAAGCTTTACTTAAAAGACTTATGATTCTGATCTGTCCAGGATCAGCACATCAACCACACTTAACAAGGCCAAAAACATGTATCATTTCATCATAATATATTATTTTAAAGTTTTGTTTTCAACACTTTTACAACGCTTACTTTTAGTATTTTATATGATTTGAGCTTTGGGTTATGTCATAGCAAATGATTTGATATAGATATCTTAGTAGTGTCAGTCCTCCCACatatctctacctacctctctagTGGCTCTACAGTTTTAACCTAGTTACAGTATTAAACTGTGTTGTGGATTTAGCAGTCAGACTAATAACAATTAGTAACTTTCCAACTTATTTTGTGGTTTATTTTCTTATTTCTGATTTTTCTAATGATCATCgtaattatcatcatcatcattagggTTATTATCTTCAATATTTGTTTAATATGATgagatatttttatttttctaggcaggtcagttaagaacaacatcttatttacaatgacggcctaccccgaccaaacccggatgacgcttgaccaattgtgcgccgccctatgggactcccaatcacggccggttgtgatacagcctggatattaTTGCCTCCTTTGTTTCATAACTTATTTTATACAGTGGActcaaattattgacacccttgataaagatgagcaataattaCTCTGTAAAATGAATTATTAAAATACTGGGCTATATTGTATGCAACAAAAAAATGGGAAGTTATGTTATACGaataattgctcagagaaagagattctgtttaactagcaatacaaaaaaatacaaataaagataggggtcaaaattattggcacccctgttttcaatactccagcatcCTCCCCTTGTAAGGAcgctgagcctttttctaaaatgttttatgatatTGGAGAACACGTTGGGAGGGATCTTTGACCATTTCTCCATACAGAATCTCTCCAGATCCTTGATATAATTTGTCTGCGCTTATGGCCTTCcatcttcaattcaaaccacaggttttcaatggggttcaagtctggagactgagatggccatagcaaaatgtggatgtgtggtcaattaaccatttctttatggattTAGTGGTTGGGGTGGTTGGGGTTATTGTGTTGCTGGAATAGTCCCTTAACATCAATGATCCACCACCCTATTTTACCGTATGAGGAACGTTttcaccactggtgtgcgtggccaaagagatCCATTTTCATGTTATCTGAacatagagctctttggccaagcacaccagtggtgggtttggtgttgAAAAACCGAAGCATATGCGTAAAAGTACCTCATACCAatggtaaaatatggtggtggatctttgatgttatggggctattttgcttccactggtcctggggcccttgttaaggtcaacggcatcatgaactttacccagtaccagggcATTTTTACCGAAAACccggttgcctctgccaggaggctgacactTGGCAGCAAGTGGaacttccagcaagacaataaccccaagcactaatcaaaatccacatagaaatggttaattgaccacaaaatcaacattttgcaatggccatctcagtctccggacttgaatcccattgaaaaatTGTTGTTTGAAGGCTCAGTGTAGTTATCCTCGCAACGTGAGGGTGCTAGAGTATTTTAAACAATAATTCTGACCACTATCTTTTTTAGATTTTCTTGTATTacatgttaaaaaatatatatttctctgagcaattgtattagtgtaAAATATAATTTCTCCTTGTTTAAAGAAAACAACAAAATAGCTCAGTAtttttataatttattttataccattttttttatcacctttatcaagggtgccaataaggatggacctgactgtatatgAACACCAAAATGTACTCTACTGCCTGTTgcttcaagcacacacacacacacacacacacacacacacacacacacacacacacacacacactacactacactacactacactacactagaatGTATTGAGATGTTGAACTAAAATAATCCTTTATGCCTTTCATTATATTTGTTtgcctgttttttttaaatacactaccattcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagctatttttgtctattaaaataacaccaaattgatcagaaatacagtgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1770771 lncRNA downstream 4987 39750319 ~ 39750552 (-) True G1547510
TU1770762 lncRNA downstream 18549 39736791 ~ 39736990 (-) True G1547501
TU1770733 lncRNA downstream 76410 39678604 ~ 39679129 (-) True G1547474
TU1770706 lncRNA downstream 143992 39609934 ~ 39611547 (-) False G1547454
TU1770708 lncRNA downstream 143992 39610384 ~ 39611547 (-) True G1547454
TU1770799 lncRNA upstream 32877 39807019 ~ 39807225 (-) True G1547537
TU1770812 lncRNA upstream 63379 39837521 ~ 39837785 (-) True G1547550
TU1770820 lncRNA upstream 81953 39856095 ~ 39856321 (-) True G1547558
TU1770823 lncRNA upstream 83517 39857659 ~ 39857863 (-) True G1547561
TU1770872 lncRNA upstream 150497 39924639 ~ 39924993 (-) True G1547609
XM_021571979.2 mRNA downstream 32003 39697624 ~ 39723536 (-) True LOC110496209
XM_036952765.1 mRNA downstream 66789 39642841 ~ 39688750 (-) False LOC110496816
XM_036952766.1 mRNA downstream 66800 39642841 ~ 39688739 (-) False LOC110496816
XM_036952767.1 mRNA downstream 66800 39642841 ~ 39688739 (-) False LOC110496816
XM_021571978.2 mRNA downstream 113736 39625771 ~ 39641803 (-) False LOC110496208
XM_021571982.2 mRNA upstream 90845 39864987 ~ 39897336 (-) True atp1a3a
XM_036952772.1 mRNA upstream 159502 39933644 ~ 40019540 (-) False pvrl2l
XM_036952771.1 mRNA upstream 200093 39974235 ~ 40019541 (-) True pvrl2l
XM_036952773.1 mRNA upstream 255508 40029650 ~ 40034564 (-) False LOC110496213
XM_021571986.2 mRNA upstream 264401 40038543 ~ 40048166 (-) False LOC110496214
TU1770684 other downstream 66858 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 107525 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 109006 39642855 ~ 39646533 (-) False LOC110496816
TU1770682 other downstream 124441 39625775 ~ 39631098 (-) True LOC110496208
TU1769526 other downstream 967738 38776284 ~ 38787801 (-) True G1546396
TU1771745 other upstream 611828 40385970 ~ 40391883 (-) True G1548367
TU1771911 other upstream 866033 40640175 ~ 40685641 (-) True G1548517
TU1772024 other upstream 1131545 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 1889294 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 1894118 41668260 ~ 41671514 (-) True LOC110496277

Expression Profile