RNA id: XM_021572037.2


Basic Information

Item Value
RNA id XM_021572037.2
length 4209
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110496253
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 40786827 ~ 40807771 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGTAGATCATGAAcgactacttttttttttactgttgtcTTTAGGTTATGCCAGAATCTTTAGAATTACCAGCGGAATATGCGCGTTACCACCGACTACTTACAATTGGGAATTTTACTGCTAGCTTATCGTCCCAGCAACAAAAGGCTCTAGGCAGGTGAATGCCATCTGTGATGAACTCTCATGAAGCCGCACACGGGAGCTGACGTCCACAGTCCGCAGGAGACACCACTGCAGACCCAGGACAGTAGAGGAGCAGGGTCTTCTTCAAACACTGGAGACTTACCCTCCCCCTGACCCAAATAACATCCCACATCAGTCACCAGCATGTCCAGTCGCAGGAAATCCTCCACCCCCTGCATGATCCGGGTTAGTGACATAATAGAGCAGGATGACTCTGAAGAAATGGAAGTGTCCACTGCCAATGTGACCAACAATGGGTCTTCAGAGTCTGTGGAAAATCAagaccatacagtacaagacACTATAGAAGATCTAGGAAGTGAGATTGAAACAAAAGTTGTGGCGGAAGCTGATCCTATGCCCCAACTGAGGCAGCATGGAAGTTATGAGTGCAAATACTGTCCTTTCTCCACCCAGAAACTCAATGACTTCAAAGAGCACGTAGACTCCAGTCACCCCAATGTCATACTCAACCCCCTCTATCTGTGTGCCGTGTGCAACTTCAGCACCAAAAAGTTTGACTCTCTTACAGACCACAATGAGACCCAACACCCTGGAGAGACCAACTTCAAGTTCAAGAGGGTAAAAATAAATAACCAGACTATCTTGGAGCAGACAATCGAAGGCAAGACCAATTCAGTTCTCTGCAATACTGTAGACGGACAAGGCGTTGTCACTTTTCCACCGAGCAAACCAATTACGGGGAATATCGGAAAGCCAAACATGGACAACATACAGTCCCTCTACCAAGGGAATGATTTGGAAAAGAGGTTGGAAAACTTTATTCCAAAAGATCAAATCACAGCTGTGAACATAAACGGCACAATGATCATCCCTGAACCAACAATCATTCAAGGGCTTTCGTATGTAATGCCATTGCTTCAAAGACCACCCAATTTCTGTTCTGTGCCAACAATTGCTGTTCCTCTGAACTCCACCAAATATAATCCTTCACTGGACAATAACACAACCCTAATGACATCTTTTAACAAATTCCCTTACCCAACCCATTCTGAGCTGTCCTGGCTAACTGCTGCGTCCAAGCACCCAGAGGAGCAAATAAAGGTGTGGTTCACTACCCAACGGCTAAAGCAAGGCATCACCTGGTCACCAGAAGAAGTCGAGGAAGCCAGGAAGAAAATGTTTAATGGCTCCATCCCACCCATACATCAGACCTTCACCGTTCTGCCTACCCCAATTTCTCATCCTGCCAAAGCCACCCAGCCCCTTATTCAGACTAGCTTTGGGCAGTCTAATCTAGTACTGACAAGTATTGCTAATGGATCAACCATGACCTGTGCTCCTGTTGCAGTGACTGTAGCTAGTTTTGTGCAACCTCTCAAGCGACCCCTGACAACTCCTTCATTCGCCCCAGAATTAAAGCGCCCCATGGCGGCCCCTGCAGAAGACCCAACGGAGAAGATACTAATGGCCCCTCCTCCAGTTCCACAAAAAGAGAGACTTCCCATGGCCCCACCCCCAGTGCCCCCAGAATTAAAGAGATCTGTAGCATTTCCTATTATCGCCTCGGAGATGAAAAGGTCCTTGGCAGCACCTCTCATGGTTTCTAAAGGAAAACTGCCCTTGGCCACTCCACTTGTGAACCCCAAAAACAAGCTGCCAATGGCACCTTCTCCAGTCTTCCCTAAGATGAAGAGACCTATTGTCACCCCTCAATTCAAGAGTTACATGCTGCCTCCTCCTTCATTAGTTTCCAAAGACAAACTTCCAATCACCCACTCTCTATTGGCTTCAGACTTAAAGTTACCAATCTCACCCCCTCTCATTGCCCCTCAAGTGAGGAGGCCAACAATAATCCAGTCAGTGTGGACTCCCCTCAAGGGCCCGTTCCAACTCCCTAGCTTTTACCAAGACCGCAAGAAAACAAAAACGCAAATAACAGAGATGAAGGCCAGATATGTCAGAGGACGTCTCTCAGAGGACAAAGTGCTCACCCCTCTTGGGGAAGCCAATGGTGTCTCTCGTGGGGATGCAAAGTGGGTTCATGACCAAGGGCCTCATGCACAGAACGGCATTCTACAGTTGTACAACGAGCTAGCATCGAAACCAGAACAGCAACAATCAGTTCAGACTCAATTTCCACTCTTGGAGAGAATGAAAGGGAAGACTTCTGAGCAGTTGAAGATTCTAGAAGAGAACTTCCAGAGAAACAGCTCTCCAACATACAATGATGTTGACAATCTAGTGACTGCAACCCAACTGTCGCGGGAGGAAATTGACAGCTGGTTTTTAGAGCGCCGGGCGCTGCGTGACAACCTTGAACAAGCTCTTCTAAACTCCATAGGCTCAAAGAGACTCAATGTTGATAAGCGTCAGCAACAACACGGACCGCTGAATGGTGTGCGCAAGCAAGGTGGCCATCCAAGAAGCTCTCCCTTTGCCATCATTGCCCCCACCACCACTTGCTCAGTGCCTCTAGACAGCAAATCCTTGGCTCTTCTCAAGGATGTTTTTGCACAAACTCGGTGGCCTTCCCCTGAAGAATACAATCAGCTTGAGGCCCAGACAAGCCTGGCTCGCACAGAAATTGTCCGCTGGTTCAAGGACAGTAGGTCAGCACTGAAGAGTGGGACCTTGGAGTGGATGGAGTTTTTCCATAAACTGAACAGCAGTGGGCAAAATGGCGAGGGGGCGCTACTGAGCACAGAGAATGCTTTCAGCATAATCCAGCGCTACCAGGAAGTAAAGGCACCCAAGGTGGAGGATATTGGGAGGCTAACGGAGCATGCCAGTCTTAGCAGCCAGGAGATCAAGGAATGGTTTGCCAGCAAATTGAGACAAAACACATCTGATATCAGCCAGAATTGTGGCCAAAATGGAGGCTCTCGAGAGGGGTTCGGGAGCTGGATGGAGGAAACCAAGGGGATGGATGCACGCATGGGTGCTAAGGAGCTGGTCTCGGACAAAGACAGGATGATGGAGGATGCTTCTGGAAGGGTGACTGGATAAAGGGTGAAAACCGTTGCCACTGTCAGTTGCACACAGGAGCTGAAAAGGAAAGAGTTTAATTATTGAATATTGTATTTTCTGAACAAATTATTTCTTGCTTGTTCCATCCCAGTTTGTGCCCAACATTTCCTCAAGGTTGAGTTAACTTTGTAGAACGTTTTCAAAAACATGGTGGTAATGTTGTGTGTGATTTAGGATGAGGTAGAAGGCACAGTGCACTGAATGTGTGCCTGAAGCACTGACCAGGTGGTGATCGTTGAGTGCCAAAGCTGGATTTGCTGTGTTATTACACTTTTAAAAAAAGGGTTcttgtaaatatattttttctgtgTTGCTACAGATTTGTACAATTTTGGGGGAATTTTGTTACATTTTATAATGGGAGCAACTTGCCCCTTTTTTTCGCTCCAGCGGATCTTAGTGGTCTGTCCTACATTTTGTAATGAAACACCATGAACCACTACAACCGTTGGCAATACTTCAGTCCGTTTTCCAATGCTGAACTTCCGTTGCAGTTCCCTCCTGTCAGGTGGacttatatcaaatcaaactatTTACGGTTCTGAAGTGCTATTGTACTCCCTGGACTCTAAGCCAACCTGCACTTTGGTAAGGAACATGCTTGTTTGACCAAGTGATGTTGTGGATCATTGTTAGAGAAAAGAAACGGTCAGTGGCAAAACCAGAAAGAAATAATCACATTGAAACAAATCCAGAATCATGCTGCCTGCCTGCATCATATTCTAATCTTTCTCTTTTGATTTATTTGTTGTCCTGCAAATGAACATACACATCTGTAATAGCCTTTATACCTACGTACATGTTGACTTAATAGAAGTAGTGCTAGTTCCATTCCGACATTAGAAACAAACCAATACAAGCTCTTTATGTACCGCTTTAGTGTCATGGTCAAGACATAGTGCCTtcgagaaagtattcagaccccttgactttttccacattttgttacgctacagccttattctaaaattgattaaataaaacatttcagtaatctgcactagaggtcgaccgattatgatttttcaacgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1772042 lncRNA downstream 181 40783978 ~ 40786646 (-) True G1548631
TU1772038 lncRNA downstream 26257 40760345 ~ 40760570 (-) True G1548627
TU1772022 lncRNA downstream 43311 40742733 ~ 40743516 (-) True G1548613
TU1772016 lncRNA downstream 45837 40739875 ~ 40740990 (-) True G1548612
TU1772018 lncRNA downstream 48563 40737220 ~ 40738264 (-) False G1548612
TU1772058 lncRNA upstream 23594 40831365 ~ 40831747 (-) True G1548647
TU1772069 lncRNA upstream 42846 40850617 ~ 40850823 (-) True G1548658
TU1772091 lncRNA upstream 81821 40889592 ~ 40957871 (-) True G1548678
TU1772025 lncRNA upstream 94748 40902519 ~ 40908625 (-) False LOC118941164
TU1772154 lncRNA upstream 193344 41001115 ~ 41073864 (-) True G1548739
XR_005037478.1 mRNA downstream 108750 40675469 ~ 40678077 (-) True LOC118941161
XR_005037479.1 mRNA downstream 108756 40675469 ~ 40678071 (-) False LOC118941161
XR_002469532.2 mRNA downstream 233208 40545209 ~ 40553619 (-) True LOC110496249
XR_005037481.1 mRNA downstream 283349 40501665 ~ 40503478 (-) True LOC118941163
XR_005037480.1 mRNA downstream 285417 40500738 ~ 40501410 (-) True LOC118941162
XM_036952831.1 mRNA upstream 7056 40814827 ~ 40901989 (-) False LOC110496254
XM_021572040.2 mRNA upstream 7056 40814827 ~ 40901990 (-) False LOC110496254
XM_021572039.2 mRNA upstream 7056 40814827 ~ 40901991 (-) False LOC110496254
XM_021572042.2 mRNA upstream 10486 40818257 ~ 40901992 (-) True LOC110496254
XM_036952832.1 mRNA upstream 95985 40903756 ~ 40908744 (-) False LOC118941164
TU1771911 other downstream 101186 40640175 ~ 40685641 (-) True G1548517
TU1771745 other downstream 394944 40385970 ~ 40391883 (-) True G1548367
TU1770684 other downstream 1098146 39684787 ~ 39688681 (-) True LOC110496816
TU1770675 other downstream 1138813 39642855 ~ 39648014 (-) False LOC110496816
TU1770674 other downstream 1140294 39642855 ~ 39646533 (-) False LOC110496816
TU1772024 other upstream 97916 40905687 ~ 40908625 (-) True LOC118941164
TU1773336 other upstream 855665 41663436 ~ 41671514 (-) False LOC110496277
TU1773335 other upstream 860489 41668260 ~ 41671514 (-) True LOC110496277
TU1773748 other upstream 1507515 42315286 ~ 42316079 (-) True G1550177
TU1773779 other upstream 1551377 42359148 ~ 42359628 (-) True G1550202

Expression Profile