RNA id: XM_036952986.1


Basic Information

Item Value
RNA id XM_036952986.1
length 3675
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110496414
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49123749 ~ 49131358 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaaactcaactctggaccttgaaACCAGTCCACTGCatgttttcattgttcccctctaaccagTTACTGATTAGGTGTGACTGCAATTCAGGTAGAACAGAACCAGCAGGTTGAAgacctcataggGGCAGGGAAACCTCCCCCTGGACTCCATCTAGATGTGGTGAAGGGAGACAAGCTAGTAGAGAAGCTAATCATTGATGAAAAGAAATACTACCTGTTTGGGCGGAACCCAGACTTGTGTGACTTCACGATAGACCACCAGTCGTGTTCTCGTATCCACTCAGCCCTGGTCTACCACAGACACCTCAAGAGGGTTTTCCTGATCGACCTCAACAGCACACATGGTACATTCCTGGGTCGTATCCGTCTGGAGCCCCACAAGCCCCAGCAGGTGCCCATCGACTCCACCATGTCGTTCGGGGCATCCACACGGGTCTACACCCTGAGAGAGAAGCCCCAGACCCAGACTAACACCATACCTGGAGGGGAGGTGAAGGCAGGGGAGGACGAGGAGCTCAAAGGACTGCTGGGTCTACCTGAGGAGGAGACTGAGCTGGAGAACCTGACAGAGTTCAACACGGCCCACAACAAGCGTATCTCCACCCTGACCATTGAGGATGGCAATCTGGACATTGTGAGGcccaagaggaagaggaggagtagcaGGGTCTCCTTCAGTGAGGAGGAGGTCATCATCAACCCAGGTGTGTTAGTTAGGGTTGATGACCCACgtgcccatacacacacacttgcacacagaCATGCAAGAACACACACCCGTGCAAAAATTTCAAAATATAATCCTGTGTGTCTTCTTGTTTTTACAGAGGACGTCGACCCATCAGTAGGGCGCTTCAGGAATATGGTACAGACTGCTGTTGTCCCGATCAAGaagaggaagatggagggTCACGCTACACTAGGTCTGGAGGACTCTGTGGCCAGACGCATGCAGAACTTCCCTTTCAGTGGAGGGCTCTATGGAGACCTCCCACCCACCATTGGAGAGGCCGGCTCCCTCCCCGCCATGGCCCAGGGTGGAGCTACTATCCTGGGGGGCCTGCCGCTAGTCTTCCCTAACCCTGCTCCCGAGGTGGACCTCTCCCCCACCTCAGCCTCAGCACAGCCCTTCGTCACCCCCAGCCCTGCTGTTATCCTCGCCCCCGGACCCTACACCACCGAGGCTCTCAACGAACCACGCAAGAAGAAATACGCCAAGGAGGCGTGGCCAGGGAAGAAGCCCACCCCTTCTCTTCTAATATAGGTCATTttgaaaatggcaacctatttcccttagtgcactactggccaaaggtaatgcactatatagggtaccaTTTCAAATTTGCACATAGCACCTCCCTGGACAATATAATGGGAGGGGTTAGTATTAGTTAGGAGAGTGGTCACGTCTCTGGACAACCAATCAATCAAGACTTCCTGTACTGTACAAGCTGTGACAAAGGGATATAGGGATCCCTGATATAGGGAAATGTTTGTGAGAATAATATATTATTTTGGTTtggatgtttgttttttttgtctgctTCATAcgtatattgttttatttttattgctCAACTCACTTAAACTGACAAAGTAATGTCTGACTGACCTCAGATTAGCGTATTGTAACTAACACAGATTGGTCCATTGTTTTACAGctttatttattcattattttaaACTAAATGAAACATTGCTCTGTTGCAGAAAAATGTCTTATAAACTCGCTATTCACTCTCTGACTGTTTGATTCGCAGTATGATTTTGCCTTAGTGGATATTTTTAGTGCTGTTGGTTTCACTGAAaaccatgtttctgtcaatacaGAGGGTAACATTAACCAGACAAGGCCTGCTAGATGTTTTAATAATCCACTCAGACAAGGCTATGAACTGTGGGTACAGATTGGCTTTAAAGAAACTATGAAGAAACAGAGCAGTTTTTGTGTGTGAGACAGTTGTATTATAATTTTTTGCTATTTTTATATGAGAATTGGGGGGTTGGTTGAAATGGAATCCATTATTGTCAGATATGTATGAAATTCAGTTTAGAAAAGAAATAAAGTTTAAACAAAGTGACATGCAGGTTATTAGAATTCATATCTTTTGATATTTGTATAATAAACAGTAATAATCCATACTCCTCTCTCCACTGTGTGAGAtgatggtgggagaggaggactagttTAGTCCCTAGAGAAATCTCCCACTGGGTCTCTGCTGTTGCTTTCATGTCGCCAGTTTTTCCTTTTTACTTtacatgatgccatctactgAGGAAGCTCCTGGGATGGCTAATTAAGGGATTGTTCAGCTAAATGAATGTGATTGTCTGTTCTGGGAACATGTCATATGTGTCTGTTGCTTCCTCAAGGTGACGAGTTTGACGTAGGTCTCATCGAATTTAAACCTCAATTTCATCAATTGTTTTTTGTTTGAGTTTTACTTGTGGGTTTGTTAAAGCAAACATTGTTTGAAAAGGAATCTGTCCTCAAAACCATTCTGAGGTTTTATAGGGCTAAAATTAAGAAATAAATGGTTGGAATCCCATAGATGGCAGTGATTAGCAATGCTTGCTGCATCACGAAGGGTATTTATCCTTCACAATATCTATTTGATGCACAAGCTGcagacaatgtaaaaaaaatctacAGTGTGGCTCATTTAGAATGGTTGTATTTCCATGGTCAATGCCGTGTCCGGTTCAATCAACCTATGTGACTCATTTTAAATGGTTGTGTTCTTATAGTTGTTGATCTCTTTTCCACCAGAGGGCAACATGTGTACTGTGCTCTGCTCTCTTTGTGGAATCGAGAAACAACCCAGGATGTCTACCTCAGTGGATCACTAAACTCATACTCGTTGtgtcacaaatgttctccatctaGGAATGAAAATTAAACCATTATTAGGAAGACATTCATATTGGAGATATTGATATTGTTAGTATTCTGTATAAATGAATAGGTAATAGCAGACACAGGGTTCATGATTAATATTGTGAATAGGACTGATCATTGTTGATTTTGAACGGACCGTGATAGACTCATCCTGTCCCAATTTCGAGGGCCAGTAGTAAAGCTGTCCGTGTTTTGCCTTTTGGCTGGTATTATATATTTTAGTAACATCTTAATGCTTGTGATAGTCTGCTGTAAGGGAATGTTGTCAATACCATAGTTATGCTGTGCTCATTGAGGTGATCTTACTTAGAGAAACTCTGGGGTGGGTTTGGTAAGAGAATATGCAGCTGCACAATTTCACCTGTAGGGGTCTCTGGGGCTCTTTGCTGGCCCTGCTTTGCTGTCTGTTttttgtgtctcaaatggcaccctattccctttatagtgtactactttcaaccagagctctatgcactagatagggaatagggtgtcatttgggatgctatCTGTCTCCCCAGTGCCGATAAACCACCAGCAACTCCTTAATCAAATTTGCATGAGTGCGCTCAGGTTGCCATGGCAATAATTATTAGCGCTGCCTAATTAACTTTCTCAATTGCTTAATGAGATACGACCCTCTgaactcttttttttcttctttctaatccatgttttctttttttaattctctccatcttcccttctctctcgccTCAGTGTTAACCTGTGACCACTGAGATAATAAAAATAAATTCTGCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782324 lncRNA downstream 37728 49084672 ~ 49086021 (-) True G1557879
TU1781716 lncRNA downstream 83297 49040180 ~ 49040452 (-) True G1557376
TU1781700 lncRNA downstream 93733 49029769 ~ 49030016 (-) True G1557360
TU1781529 lncRNA downstream 388961 48734557 ~ 48734788 (-) True G1557202
TU1781515 lncRNA downstream 407982 48715563 ~ 48715767 (-) True G1557188
TU1782352 lncRNA upstream 3316 49134674 ~ 49137971 (-) True LOC110496415
TU1782445 lncRNA upstream 131299 49262657 ~ 49319177 (-) False G1557993
TU1782444 lncRNA upstream 184919 49316277 ~ 49319177 (-) False G1557993
TU1782446 lncRNA upstream 184919 49316277 ~ 49319177 (-) False G1557993
TU1782447 lncRNA upstream 184919 49316277 ~ 49319177 (-) False G1557993
XM_021572297.2 mRNA downstream 6533 49062731 ~ 49117216 (-) True LOC110496413
XM_021572293.2 mRNA downstream 272514 48838752 ~ 48851235 (-) True LOC110496409
XM_021572291.2 mRNA downstream 272798 48837413 ~ 48850951 (-) False LOC110496409
XM_021572292.2 mRNA downstream 272798 48837413 ~ 48850951 (-) False LOC110496409
XM_021572290.2 mRNA downstream 289101 48829188 ~ 48834648 (-) True LOC110496408
XM_021572301.2 mRNA upstream 5384 49136742 ~ 49146144 (-) False LOC110496415
XM_021572302.2 mRNA upstream 5384 49136742 ~ 49146147 (-) False LOC110496415
XM_036952989.1 mRNA upstream 18927 49150285 ~ 49165567 (-) False LOC110496840
XM_021572857.2 mRNA upstream 18927 49150285 ~ 49167001 (-) False LOC110496840
XM_036952990.1 mRNA upstream 18927 49150285 ~ 49182882 (-) True LOC110496840
TU1780876 other downstream 766902 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1140140 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1178175 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 1577178 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2210834 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 836538 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 891733 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 1224911 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 1305639 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1491733 50623091 ~ 50623983 (-) True G1559205

Expression Profile