RNA id: XM_036953042.1


Basic Information

Item Value
RNA id XM_036953042.1
length 6560
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110496457
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51101879 ~ 51114958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACCCCAGAAAGCGCATGCTCGACACGTGTATGACGTCAAAAACGTCACAGGGTATAAATACCAAGTCCCTCCCTTTCTAGTTCATTCCTGGATTTGTTCTGAGGTCTTTTGTCTCTGAAGAGTGACCGTCGAGGACTTTGAACATCCTAATTCAATAATCTATTTTTTTCTTCAAGTAATGGACATTTGATTACTATTTTTGCCTCCAGTTTGTTCCAGAAGGAAAAGCTAGTTTTTAGCTACCACAACCCTGCCCATAAAACCAGTTTTTCCAGCCATAAGATTGTTAACGTTAAAACATGACGGTTAACGATTTAAAACTGATGTAACAAGATATCTGTTGCTGTAAAGCACAATATAATATAAGTTACCCGAGACGCTGAGGAGAGGTATTTATAGTAAGTGTTGATTTTCAAACCAATCTGAATCTAACGTTAAATTCATTAAATGAGAAATCGTTTAGTCGCAACTAATGTAGTCTAGGTCCGCTGGCTGGTCTCGGTGCGGGGCTGCTGTTTCCATTAGCGAAGCTAACGCGTTAGTTTATGAGCTCACACAGGAAAGTGCGGAGTGGAAACGCTCCGTTTCTTTGTGTGTGAGACGGATCAACATAAACTGTATAACAAATGTTTAATTTAAGCATAAGCAATCTATTCATAAAGATTGCCGTGGGTTAAGGGGATATTTTTCTCCCTCTGCTAAATTGATAAGAGATCCTTGGAATTTACACCTACCGCAATCTATACATAAAGATTGCTTAGATTGAGGATTACGGATTTCACTGGAAAAATTGGTCATTTGTGGTTATTGTTTTTTACGCATGCCATTGTATCGTCGATATCGTTAGAGCAGTAAATTTCCCCAGGTGTCCGATATTTATACGGCAATCTGAGGATAAAGATTGCAGGATGGAAATGTTCATTCGAAATATTGTACAAGGCAGACTGGTTTCGTTGGAATTACATCAAAATGGCGAGGTAGTTGTGTCTTTTCAGAACACTCGAGGCAGTAATGTATGTTTTTCTGGAGCGACAGGAGTTGACTTCCCTGAATAGCGGAACGAGTTTCGTCACGATGTAGCCGTTGTGGTTCGCCACGGTTAGTCATTTTTTATAGGTAGTAAATGATCCTCCGGCGCTGCTAATGTGATAGTAGGCTAACTGTTGTGGCGATGTAGCTGGCATACATGATTCTTTATGTTCTCGAGACTGGCAGCCACGAAGCAGTTAACAAAAGAGGGCAGGGCCTAGATGTAGTTTCGATGGATCACGGGTTAGCTCCCCCTAACCAGAACTAGTCATTGAACAGGATCTTTATTCTAGTGCTAGGGTAGGGCGTGCAATACAACGACTGATGCAGAGCTTGTCTTAAAAGGGCTGCCTGCTGCATGATATTCTTATATAACCATCATGAACATTGTGTGGGTGAATGAAAGGCATATTCAAATTCATTAAGTTGATCTTTGTTCTTTCccaatttattttatattttactccATAGgacaaaaatatgtattttatttaatggTGATTGTCAACCATGGATAAGAACATTGTTATGTAAACAGAAAAAATCACTGGTATGGGCAGGGCTTTGAGCTATTGTGACAGACGTATTTGTTACATTCTAGCTAAATGATAACAGGTGTTACTGTTTTCAACTGCATTGCTATATATTTCAGCAAATACACCAAAGCCATTTTATGTGTGTATGAACATTAATTTACTTGACATCTATTCCCCCGTTGAATTGTTCTTTACTAAGCTCATGTCTCCCCAATAACTTATTTTTATTGACTTTGTGAGTGTGTAACAGTTGTGACATTTTCAGGAGTTGTGTGTTATGTCCCGTGTTGTGGAGTTCTGAGACTATATAAAACTTCTACTACAACAGTTAAACGGAGCAGAGATGGCGGTGGGCCCAGTGGACCCCAGAGAGGTCCTGAAGGGAGTAGAGAACCTtctggggaaagatggagagctCCGCAGCCTGGAGGGAGTCACCAAAGTCTTCAGTCTCATGAAGGCCTCTCACAAGATGGTGAGCAGGTGTATGTACCTGAATATCCTACTACAAACCAAGTCCCACGACATTCTCAACCGGTTTATCCGAGTGGGAGGCTACAAGCTGCTGAACGCGTGGCTGACCTACTCCAAGACTAGCACAAACACCCCCCTGTTACAGCTCATCCTGCTAACGCTGCAGAAACTGCCCCTCACTGTAGACCACCTGAAACAGAACAACACTGCCAAACTGGTCAAGCAGCTCAGCAAGACTGGAGAGACTGAGGagCTGAGGAAGCTGTCCGCAGGGCTGGTGGATGGCTGGATGGCTACCATCCGCTCCCAGAGTGTCTCCACCACCTCTCCTGCAGataAGAAGCGtaagaaggaggaggggaaagtgCCAGTCCGAGAGGTGAAGGCAGCTGATGGAGGGAAGGcagcggaggaggagaggaagagggagaagccCAAAGCTCACGCTCCCAGCCATGCTAAGATCCGCTCCATAGGCCTGGAGATGGATGCTCCCACCCCTATCCTGGTCAAGAAGCCCCCCGTGGCCCTCCAGCTGGGGGACAAGTACAACATCAAACCAGCCCAAGTCCTCAAGAGACCCAGTTTTGGTCCTCTGGACGCTCCCCCTGTGGAGAAGAAGTACAAACCACTCAACACCACACCTAACCAGACCAAGGAGATCAAAGTGAAGATCATCCCAGCACAACGTAAGTCCTCAACAGAAACAACCCTTGAGGGTACAGGCTTCCTGGATGCCCTAAACTCCGCCCCCGTGCCTGGCATCAAGATTAAGAAGAAGAAAGGGAAGGAAGGTAGAGACCCCAAAGCTGTCTCTCCCACATCAAAcaagcCGTGTCAATTCGAGGGTAAACTCCCCTACCTGTCGCCTCAGGGCGGTGCCAAACCCTTGTCCCCAGAGACCCAGATggcctccaccacccctccccacGAGGTCCCTGTAGACCTGGAGCAGCCTGGGACGCCGGTCCCTGCTGACGATCCCGAGGCCATGGACACGGGCAGCGAGAAGCCCAACGCCCTGGCGGAGCCCCGCGGTGAAGAGGACAGTCAGCTGACCAAGAAGGGCAAGAAGAAGAAGAGCGTGCGCTGGGCCGAGGAGGAGCAGCTCAAAGAGTACTTCTACTTCGACCTGGACGAGACCgagagaggtgagagaacaaAAACTAACGtcaACGTCAACAAGGTTAAGGACTTTGGCGAGGCGGCAAAGCGAGAGATGATGATGGACCGCCACACGTTTGAGATGGCGAGACGCCTGTCCCACGACTCCATGGAGGAGCGGGTACCTTGGAGCCTCCCGAGGCCCCTGGCCCTCACCGGCCCCCTGGTCAACGCCGGGGCCAACAGCACAGAGAGACTCACACAGAGGGACCGTGAGACTGGCATCCTGCAGGAGATTTTCCTCACCAAGGAGAGtgttCCTGACAGCCCCCATGAACCAGAGCCTGAGGCCTATGAACCCATGCCTCCACGCCTCATACCTTTGGACGAGGACTCCACCATGATGGAGCCCATGGACACGTCGTCCCAGCCTGGCTCTGGCGTGGGCCCCGGGGGGGTTGAGGCCTCCAAGCTGCCACCCGTCCTCGCCAACCTCATGGGGAACCTTGGGGCCAACAACCTGTTGGGCAACCTGGGTAACCTAGGCAACCTCGCCCAGGGCACGCCTGGTGCCCCCGCTGCCCCCTCCGTAAACGTACAGGAGCTACTCACCTCCATcatgggAGCTAGCGGTGGCCAGTCTACTGAGGACCTGATCAAGCAGCCAGATTTCTCTGAGAAGATCAAACAGCTGCTGGGCTCTCTACAGCAGAACCAGGGCCCCCCCACTGGCCCCCCGCctggagTGAACCATGGCCTGTTGGGCCACGGTCCAGGCATGAACAACCTGCCCAACATGAACAACCTCAACATGGGCATGCCCATGAACGGAGTGGGTTTCCCTCCTGCAGGCAAGCCCCCGGGCCCCGGAGGACCCCACTACAACCACCCCCCGCCCCCACACAACCACGGACCCCCTGGCTTCAACGCTAACCCCCGCATGATGGGGCCCCCGCCGCCCCAGGGCCACGGAGGAGACAACGGCAACTACTGGGGGGACGACTCGATGAGGGGGGGGCCACACCGGGGGGGACACTTCCACCGCGGGGGCCGAGGTAGAGGAGGGGAACAGGTGGGCTTCAGAGGGAGAGGACGTGGAGGACCTAGAGGAGGACACAACAACATGGGAGACATGTCCAAAAGGCCAGTGTGTCGCCATTTCATGATGAAAGGAAACTGCCGTTACGAGAGCAACTGCGCTTTCTACCACCCCGGCGTCAACGGTCCTCCCCTGCCCCCCAACCACCCCGCCCACAACCAGTACAACGACCATGGGCCACAGCACGGGCACTAGACCACCCAACACACCACTGACACAAATACGTGACAATACCATTTTATCACCACTAGGTGGCAGAACTCTGAATTAAACTCTGCTGGTTTGGTTTCACCACTGGGACAAAGGTGCAGAGAGACAGATTGCCCACCAGGCTAGAAAGACATGGTGAAAGACAAGCCAATAGATAGACAGACAAGGCAGTCCTGCTGCCTTAACAATTGCTCTGCACGGGTCTGCTGATATCAATGTGATGCTTCTGCAGGTCTGTTGAAGAAGCAGTTCTGCTACTGTTCTCCTTCTGTGTGACTGGGACTTTGATATGAGGACTCCCCAGTAGCAGAGGAAGATACTGAATGTACAGGGCAGAATCAGACATGTCTCTACTACTTCCTTTTCTTCTCCACACACCAACCTAAGATGTCCACCAAGAAATGCTCAACTTCCTACATCCCTTTGTTTGCCCTGCTCGCTCAAACTCCCTCAATCAGGGATAGAGGACATTGCTTGTATgcaagaatacacacacacacacacacacacactcatgccccGGCTTTGGAAAGTATAGGTACTGCTATAGCTCTGAGATGATCATTCATATGATGTAGATGTTTTATTGTGATCATTTTTAACACTGTTGGTTCAGGTTGATGATGTACAGTAACCACACACTATGACTACTCTGGTTGCTGTCTGTCACTGTCCCATATAGCCTATCAGCTATCCCTGACTTATGCACTAATCTCCTATATATTTATCTGATAGTGATTTATCAGCACTGAGCTAAGAGGTGAGCAATGATCAAGGTAGAAAATCAATAGAAACATCTCCAGCATCTCCCCAGTATTAAGTCAGACTTTAAGTCTTGAGTCAGACTTCTTTAAGCTAAATGATCCTTCCATCATTCTGCTCTGTAGTTGTGTAGTGCCATCCCTGCCCTGGGTGTCCCTATTGGCCCACGTTCCTCAGACAGACAGGATCTGTGGCCAACCTTCAGCTCCCGAATGAGTCTAAGCCCCGCCCTCTCTCCTGAATGAATGTTGCACTGTGTTCAACTGTGGTCCCTGGAGTTTTCAAACTGTAGTCAGACGTGGCCAAATGACAATGCTCAGTACACCATTTTAAAAGCTATTTATGGCCAAGTGCGCTTAAAGAAAAACATGCCACTTTTTCTACCGTAGGATTTCAACAGAAAACAAGACAATGAATGTAAAGGTGACCAAATAATAAGAATATTGTTTGTTGATATTTGCAAAGTTCCCCATAGGCAAGAGTTATCAGTGAGGAAGTACTTTAAAAAGAAGGACCTATCTGTAATGTGTAATGTCCCTCCATCCCCACCACACGGCTTGTGCTATGTTCTACTTCTATCTAGCTCTAAAAAAGACCTGACTCCCAACATTTCCCCTCCACAACAAATGGATGAAACAGTATTGAGAAGAGAACATTTAACAGAACCGCCCCTAGATGATTGGCCTACGCACTGAACCAACGCTGCCTGCAGGCTACATGTTGTTTTCTACTGGTGGGCGTTAGTGGTCTGCATATCACAGGAAAAGGAACGACGGGGCCAAGTGTTGCTTGATTTGACTGAGCCTTTTCACCAAGAAGGGTACATAACAGTGAATGAGGGTTTTCCTTTCTGAGGTTCAGTTCAGGAAGCCTCTGATTATATTTCATCAGCTTTATAACATGTACCACTGAGCGTGTCTTGTCTTTCATGTGACATCATGATGGTCAAATGTCCCCCTGTATGCCACGTGACAAACACAGTCCTATATTAGtgttactccacacacacaactGTGTTGGCTTCAGTTGGGTGACGCGTGTTCAGACTGTGTTCTATGTACAACGGGGTAAAACTATGGAATCATTCTCTGGGTCAACTAATTCAAAGTGTTTTCTGTGAAAACAGTGGCCTTCATGTCTCTTGTGGGACTAGAATTATGTCATGTTTTTGGTTGGATTTATTGTGTTTATTTTGATATGATTGAGTTGGATCTCTCCAAAATGAggtctgttttgttttgttagaaATATATGTATCCATGTGTCTGTGAATGCATACACGCATTCATACACACGTACATATGAGTATTTTGTACATGTCTTAATAAATGTCCTAAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1784950 lncRNA downstream 1477 51091201 ~ 51100402 (-) True G1560214
TU1784943 lncRNA downstream 15279 51085887 ~ 51086600 (-) True G1560208
TU1784937 lncRNA downstream 17481 51083914 ~ 51084398 (-) True G1560205
TU1784890 lncRNA downstream 79967 51021497 ~ 51021912 (-) True G1560165
TU1784840 lncRNA downstream 148172 50946532 ~ 50953707 (-) True G1560118
TU1784958 lncRNA upstream 17794 51132752 ~ 51138114 (-) True G1560222
TU1784995 lncRNA upstream 91890 51206848 ~ 51207067 (-) True G1560249
TU1784997 lncRNA upstream 93048 51208006 ~ 51208214 (-) True G1560251
TU1784999 lncRNA upstream 96338 51211296 ~ 51211705 (-) True G1560253
TU1785032 lncRNA upstream 169274 51284232 ~ 51284547 (-) True G1560286
XM_021572371.2 mRNA downstream 4989 51094092 ~ 51096890 (-) False agr2
XM_021572372.2 mRNA downstream 4989 51094092 ~ 51096890 (-) True agr2
XM_021572366.2 mRNA downstream 34295 51052767 ~ 51067584 (-) True LOC110496449
XM_021572367.2 mRNA downstream 52376 51046402 ~ 51049503 (-) True LOC110496450
XM_021572365.2 mRNA downstream 89740 50997523 ~ 51012139 (-) True LOC110496448
XM_036953039.1 mRNA upstream 2703 51117661 ~ 51149891 (-) False LOC110496456
XM_036953040.1 mRNA upstream 2703 51117661 ~ 51149891 (-) False LOC110496456
XM_036953041.1 mRNA upstream 2703 51117661 ~ 51149891 (-) True LOC110496456
XM_036953036.1 mRNA upstream 40456 51155414 ~ 51167757 (-) False LOC110496455
XM_036953035.1 mRNA upstream 40456 51155414 ~ 51167766 (-) False LOC110496455
TU1783839 other downstream 451626 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 477896 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 664420 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 742849 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 1067738 50023091 ~ 50034141 (-) True LOC110496434
TU1785000 other upstream 98197 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 267714 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1064362 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1134396 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1241794 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile