Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00048188 |
| length | 497 |
| RNA type | processed_transcript |
| GC content | 0.57 |
| exon number | 4 |
| gene id | XLOC_024368 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 485353 ~ 554142 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043547 | positive regulation of GTPase activity | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0061564 | axon development | biological_process |
| GO:0048675 | axon extension | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0036269 | swimming behavior | biological_process |
| GO:0098529 | neuromuscular junction development, skeletal muscle fiber | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0030426 | growth cone | cellular_component |
| GO:0016459 | myosin complex | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005096 | GTPase activator activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003774 | motor activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080424-6 | Predicted to enable several functions, including ATP binding activity; GTPase activator activity; and actin binding activity. Acts upstream of or within axon extension; neuromuscular junction development, skeletal muscle fiber; and swimming behavior. Predicted to be located in several cellular components, including cytoplasm; growth cone; and synapse. Predicted to be integral component of membrane. Predicted to be part of myosin complex. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome. Orthologous to human MYO9A (myosin IXA). |
| ensembl_id | ENSDART00000153559 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049299 | lncRNA | downstream | 32343 | 455319 ~ 456478 (-) | True | XLOC_024366 |
| TCONS_00049070 | lncRNA | downstream | 125053 | 360538 ~ 363768 (-) | True | XLOC_024363 |
| TCONS_00049069 | lncRNA | downstream | 183164 | 305008 ~ 305657 (-) | True | XLOC_024361 |
| TCONS_00048181 | lncRNA | downstream | 194212 | 288661 ~ 294609 (-) | True | XLOC_024360 |
| TCONS_00048180 | lncRNA | downstream | 197474 | 288661 ~ 291347 (-) | False | XLOC_024360 |
| TCONS_00049300 | lncRNA | upstream | 140148 | 630933 ~ 643106 (-) | True | XLOC_024369 |
| TCONS_00048198 | lncRNA | upstream | 704497 | 1195282 ~ 1196112 (-) | True | XLOC_024375 |
| TCONS_00049301 | lncRNA | upstream | 785498 | 1276283 ~ 1308073 (-) | False | XLOC_024377 |
| TCONS_00049071 | lncRNA | upstream | 814993 | 1305778 ~ 1306027 (-) | False | XLOC_024377 |
| TCONS_00048211 | lncRNA | upstream | 973594 | 1464379 ~ 1471185 (-) | True | XLOC_024380 |
| TCONS_00048185 | mRNA | downstream | 5013 | 479997 ~ 483808 (-) | True | XLOC_024367 |
| TCONS_00048183 | mRNA | downstream | 112939 | 371164 ~ 375882 (-) | True | XLOC_024364 |
| TCONS_00048182 | mRNA | downstream | 140037 | 314608 ~ 348784 (-) | True | XLOC_024362 |
| TCONS_00048179 | mRNA | downstream | 219537 | 265360 ~ 269284 (-) | True | XLOC_024357 |
| TCONS_00048178 | mRNA | downstream | 232850 | 254462 ~ 255971 (-) | True | XLOC_024356 |
| TCONS_00048189 | mRNA | upstream | 219354 | 710139 ~ 752158 (-) | True | XLOC_024370 |
| TCONS_00048190 | mRNA | upstream | 277229 | 768014 ~ 774471 (-) | False | XLOC_024371 |
| TCONS_00048191 | mRNA | upstream | 277231 | 768016 ~ 774350 (-) | True | XLOC_024371 |
| TCONS_00048192 | mRNA | upstream | 330940 | 821725 ~ 998096 (-) | False | XLOC_024372 |
| TCONS_00048193 | mRNA | upstream | 376361 | 867146 ~ 893464 (-) | False | XLOC_024372 |
| TCONS_00048212 | other | upstream | 1138870 | 1629655 ~ 1629749 (-) | True | XLOC_024382 |
| TCONS_00048237 | other | upstream | 2525385 | 3016170 ~ 3034668 (-) | False | XLOC_024397 |
| TCONS_00048288 | other | upstream | 3834831 | 4325616 ~ 4325731 (-) | True | XLOC_024429 |
| TCONS_00048296 | other | upstream | 4399982 | 4890767 ~ 4904432 (-) | True | XLOC_024434 |
| TCONS_00048299 | other | upstream | 4850177 | 5340962 ~ 5341102 (-) | True | XLOC_024438 |
