RNA id: TU1735043


Basic Information

Item Value
RNA id TU1735043
length 1855
RNA type TUCP
GC content 0.51
exon number 1
gene id G1515853
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10170102 ~ 10171956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAGGTTAGCGCTGGATGATGCTAACAGCTAACGGAGCAGATGTCTAGATGGCAATTGGCAAGTGGCTAGCAAAAAAATGTCAACAGCGAGCTAATGTTTGTCTGTCTTCTCGCCAAGTGATGTGTGCGTTTCTGCACCTTCCAATTCTTACACAGGTCAGGGTGAGGAAAGATGACGGTGATGATAATAATGAAGAGAAGACAAATGAAAGTGAATCCCACTACCTGGCTTGTGCTTACCAGTACCACCGATATGACTGCACAACAATCCCACTGCCTGGCTTGTGCTTACCAGTACCACCGATATGACTGCACAACAATCCCACTGCCTGGCTTGTGCTTACCAGTACCACCGATATGACTGCACAACAATCCCACTGACCTTTCTGGGTGCTAATGCCATGCAGACAGACAACAGTACAATCACAataactcactcactctccaaAAAAACTTTAACCGTAAGAAGAAGAATCCTCCCTCCACATAAAATACATTTCCCACATCCCACCTTGACTAGAAGCATCTCGGCCTATTGAAATGAACTGTAGACATGAGCAGAATTCTGTTAGAAATGTGAGGGCCGacgtctctgtctgtatgctttTGACTCTGGCTCTAGTTTGGTCTTTTGTCTGGTAGTTGCCCTCCGTAGTTCTGTAGGGGGATTGGCCAAGTACTCTCATAGACCAATGTGTCATTTCAAGCATGTTGAAGAGTTCATAGGCTTGGTACTTTGATGTTCAGGATCTGTGCGCTCCGAAATGAACTGTTCTCAGCAAAACATATAGGGAAAGAGAAGAGATTTTAGAAAATAAATGAAGTAACCTGTACACATCATTTACGATATCCTTTGCAGTCTGTGCTTCGGTAGCTGTTTTGCTACTTGTCTTTCGCGTGTGCATATGGCAGTCCACACTAGAACAGTATGTGTCCAAGCCAACGTTTGCTGAGTTTCAAGACTTTCCAGTTCAAGACCGAAGGGTTTACAAAGGACATTTTTTACAAAAGTTTCAAAAGTGTCGCTGCGCAGCTGTGGAGGGGAActcagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggagacagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaagagacagagaggaggcagagaggaggcagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggaggcagagaggagacagagaggagacagagaggaggcagagaggaggcagagaggaggcagagaggagacagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggagacagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaagagacagagaggaggcagagaggaggcagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggaggcagagaggagacagagaggagacagagaggaggcagagaggaggcagagaggaggcagagaggagacagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggaggcagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggagacagagaggaggcagagaggaggcagagaggagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735044 lncRNA upstream 1351 10168091 ~ 10168751 (+) True G1515854
TU1735025 lncRNA upstream 12844 10156466 ~ 10157258 (+) True G1515846
TU1735020 lncRNA upstream 30526 10138975 ~ 10139576 (+) True G1515841
TU1735011 lncRNA upstream 32505 10134606 ~ 10137597 (+) False G1515837
TU1735010 lncRNA upstream 32505 10136428 ~ 10137597 (+) True G1515837
TU1735045 lncRNA downstream 4995 10176951 ~ 10177404 (+) True G1515855
TU1735056 lncRNA downstream 38343 10210299 ~ 10210703 (+) True G1515866
TU1735061 lncRNA downstream 51627 10223583 ~ 10223794 (+) True G1515871
TU1735065 lncRNA downstream 57484 10229440 ~ 10229823 (+) True G1515874
TU1735313 lncRNA downstream 60621 10232577 ~ 10232787 (+) True G1516074
XM_036951773.1 mRNA upstream 20973 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 35974 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 48292 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 276867 9887375 ~ 9893235 (+) True LOC110495584
XM_021570905.2 mRNA upstream 294208 9874710 ~ 9875894 (+) True LOC110495581
XM_036951775.1 mRNA downstream 190614 10362570 ~ 10368578 (+) True LOC118941089
XM_036951778.1 mRNA downstream 217672 10389628 ~ 10856330 (+) True LOC110510737
XR_005037368.1 mRNA downstream 684413 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 772447 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 772581 10944537 ~ 10956829 (+) True LOC110527277
TU1734946 other upstream 194796 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1166976 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 1489892 8678448 ~ 8680210 (+) True LOC110495395
TU1732723 other upstream 1493591 8674329 ~ 8676511 (+) False LOC110495394
TU1735389 other downstream 147354 10319310 ~ 10327138 (+) True G1516136
TU1735992 other downstream 844809 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 914129 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 1461111 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 1470833 11642789 ~ 11643758 (+) True G1517019

Expression Profile