RNA id: TU1735061


Basic Information

Item Value
RNA id TU1735061
length 212
lncRNA type intronic
GC content 0.35
exon number 1
gene id G1515871
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10223583 ~ 10223794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCATTACTTTGAAATGTAGAGATCTGCATCATATCAGATGACGATAGTGATTTATCATACAAGTTACTGCACGTCTGACAATATTTCAGGGTTTTCTCACTACGAATTGAGAAATGaaggaaaaatgtatggaaaaaTACTAGAATTGAATTGAATGAATCCCTCCATAAGTGAACGGCTGAATTGAAGACTGCTCCTATACCAGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735056 lncRNA upstream 12880 10210299 ~ 10210703 (+) True G1515866
TU1735045 lncRNA upstream 46179 10176951 ~ 10177404 (+) True G1515855
TU1735044 lncRNA upstream 54832 10168091 ~ 10168751 (+) True G1515854
TU1735025 lncRNA upstream 66325 10156466 ~ 10157258 (+) True G1515846
TU1735020 lncRNA upstream 84007 10138975 ~ 10139576 (+) True G1515841
TU1735065 lncRNA downstream 5646 10229440 ~ 10229823 (+) True G1515874
TU1735313 lncRNA downstream 8783 10232577 ~ 10232787 (+) True G1516074
TU1735318 lncRNA downstream 14727 10238521 ~ 10239459 (+) True G1516079
TU1735333 lncRNA downstream 28762 10252556 ~ 10252892 (+) True G1516094
TU1735350 lncRNA downstream 39029 10262823 ~ 10263074 (+) True G1516108
XM_036951773.1 mRNA upstream 74454 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 89455 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 101773 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 330348 9887375 ~ 9893235 (+) True LOC110495584
XM_021570905.2 mRNA upstream 347689 9874710 ~ 9875894 (+) True LOC110495581
XM_036951775.1 mRNA downstream 138776 10362570 ~ 10368578 (+) True LOC118941089
XM_036951778.1 mRNA downstream 165834 10389628 ~ 10856330 (+) True LOC110510737
XR_005037368.1 mRNA downstream 632575 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 720609 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 720743 10944537 ~ 10956829 (+) True LOC110527277
TU1735043 other upstream 51627 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 248277 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1220457 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 1543373 8678448 ~ 8680210 (+) True LOC110495395
TU1732741 other upstream 1547072 8674329 ~ 8676511 (+) True LOC110495394
TU1735389 other downstream 95516 10319310 ~ 10327138 (+) True G1516136
TU1735992 other downstream 792971 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 862291 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 1409273 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 1418995 11642789 ~ 11643758 (+) True G1517019

Expression Profile