RNA id: TU1735389


Basic Information

Item Value
RNA id TU1735389
length 1390
RNA type TUCP
GC content 0.46
exon number 3
gene id G1516136
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10310107 ~ 10327138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtagtttgtgttgtatgtaaggaggtagggagagtaaagacagtagtttgtgttgtatgtaaggaggtagggagggtgaagactgtagtttgtgttgtatgtaaggaggtagggagagtgaagacagtagtttgtgttgtatgtaaggaggtagggagagtaaagacagtagtttgtgttgtatctaaggaggtagggagagtgaagacagtagtttgtgttgtatgtaaggaggtagggagagtgaagacagtagtttgtgttttttgtgttgtatgtaaggaggtagggagagtgaagacagtagtttgtgttgtttgtgttgtatgtaaggaggtagggagagtgaagacagtagtttgtgttgtatgtaaggaggtagggagagtgaagacagtagtttgtgttgtatgtaaggaggtagggagagtgaagacagtagtttgtgttgtatctaaggaggtagggagagtgaagacagtagtttgtgttgtttgtgttgtatctaaggaagtagggagagtaaagacagtagtttgtgttgtttgtgttgtatgtaaggaggtagggagagtaaagacagtagtttgtgttgtatctaaggaggtagggagagtaaagacagtagtttgtgttgtttgtgttgtatgtaaggaggtagggagagtaaagacagtagtttgtgttgtatctaaggaggtagggagagtaaagacagtagtttgtgttgtttgtgttgtatctaaggaggtagggagagtgagaaATGCTCCATTCCTTCCATGTCTTCCAGTAGTCTTATTGTAAATGAGTTGATTGATGTAATTGGTTCTGTATAATTACAATACAACAGTCCGGGACCTTAAACACCAGCCTGACGGCACAGTGTCCTGGACCTCTCCATGGCTATAACACCAGCCTGACGGCACAGTATCCTGGACCTCTCCTTGGCTATAACACCAGCCTGATGGTACAGTATCCTGGACCTCTCCATGGCTATAACACCAGCCTGAAGGCACAGTATCCTGGACCTCTCCATGGCTATAACACCAGCCTGACGGCACAGTATCCTGGACCTCTCCAAGGCTATAACACCAGCCTGACGGCACAGTATCCTGGACCTCTCCAAGGCTATAACACCAGCCTGACGGCACAGTTTCCTGGACCTCTCCATGGCTATAACACCAGCCTGACGGCACAGTATCCTGGACCTCTCCATGGCTATAACACCAGCCTGACAACACAGTATGCTGGACCTCTCCATGGCTTTAACACCAGCCTGAAGGCACAGTATCCTGGACCTCTCCATGGCTATAACACCAGCCTGACGGTTCAGTATCCTGGACCTCTCCATGGCTATAACACCAGCCTGACGGCACAGTATCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735375 lncRNA upstream 18285 10300579 ~ 10301025 (+) True G1516131
TU1735373 lncRNA upstream 20485 10298545 ~ 10298825 (+) True G1516129
TU1735370 lncRNA upstream 21132 10296807 ~ 10298178 (+) True G1516128
TU1735368 lncRNA upstream 30732 10288358 ~ 10288578 (+) True G1516126
TU1735350 lncRNA upstream 56236 10262823 ~ 10263074 (+) True G1516108
TU1735405 lncRNA downstream 9640 10336778 ~ 10337022 (+) True G1516145
TU1735418 lncRNA downstream 25220 10352358 ~ 10352662 (+) True G1516154
TU1735434 lncRNA downstream 70144 10397282 ~ 10397546 (+) True G1516169
TU1735437 lncRNA downstream 75321 10402459 ~ 10402750 (+) True G1516172
TU1735439 lncRNA downstream 83396 10410534 ~ 10410752 (+) True G1516174
XM_036951773.1 mRNA upstream 170181 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 185182 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 197500 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 426075 9887375 ~ 9893235 (+) True LOC110495584
XM_021570905.2 mRNA upstream 443416 9874710 ~ 9875894 (+) True LOC110495581
XM_036951775.1 mRNA downstream 35432 10362570 ~ 10368578 (+) True LOC118941089
XM_036951778.1 mRNA downstream 62490 10389628 ~ 10856330 (+) True LOC110510737
XR_005037368.1 mRNA downstream 529231 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 617265 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 617399 10944537 ~ 10956829 (+) True LOC110527277
TU1735043 other upstream 147354 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 344004 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1316184 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 1639100 8678448 ~ 8680210 (+) True LOC110495395
TU1732736 other upstream 1642799 8674329 ~ 8676511 (+) False LOC110495394
TU1735992 other downstream 689627 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 758947 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 1305929 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 1315651 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 1612924 11940062 ~ 11941105 (+) False G1517150

Expression Profile