RNA id: TU1735418


Basic Information

Item Value
RNA id TU1735418
length 235
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1516154
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10352358 ~ 10352662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgattagactacatttcccagtagaggtatagctatgattagactacatttcccagtagAGGTATAGCTATGATAAGACTACATTTCCCTGTagaggtatagctatgattagactacatttcccaggagaggtatagctatgattagactacatttcccagtagaggtatagctatgattagaATACATTTCCCAGTagaggtatagctatgattagactacatttcccaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735405 lncRNA upstream 15336 10336778 ~ 10337022 (+) True G1516145
TU1735387 lncRNA upstream 26493 10311935 ~ 10325865 (+) False G1516136
TU1735386 lncRNA upstream 26493 10312499 ~ 10325865 (+) False G1516136
TU1735391 lncRNA upstream 30705 10310107 ~ 10321653 (+) False G1516136
TU1735375 lncRNA upstream 51333 10300579 ~ 10301025 (+) True G1516131
TU1735434 lncRNA downstream 44620 10397282 ~ 10397546 (+) True G1516169
TU1735437 lncRNA downstream 49797 10402459 ~ 10402750 (+) True G1516172
TU1735439 lncRNA downstream 57872 10410534 ~ 10410752 (+) True G1516174
TU1735443 lncRNA downstream 61779 10414441 ~ 10414717 (+) True G1516178
TU1735444 lncRNA downstream 62095 10414757 ~ 10415193 (+) True G1516179
XM_036951773.1 mRNA upstream 203229 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 218230 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 230548 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 459123 9887375 ~ 9893235 (+) True LOC110495584
XM_021570905.2 mRNA upstream 476464 9874710 ~ 9875894 (+) True LOC110495581
XM_036951775.1 mRNA downstream 9908 10362570 ~ 10368578 (+) True LOC118941089
XM_036951778.1 mRNA downstream 36966 10389628 ~ 10856330 (+) True LOC110510737
XR_005037368.1 mRNA downstream 503707 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 591741 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 591875 10944537 ~ 10956829 (+) True LOC110527277
TU1735389 other upstream 25220 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 180402 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 377052 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1349232 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 1672148 8678448 ~ 8680210 (+) True LOC110495395
TU1735992 other downstream 664103 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 733423 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 1280405 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 1290127 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 1587400 11940062 ~ 11941105 (+) False G1517150

Expression Profile