RNA id: TU1736469


Basic Information

Item Value
RNA id TU1736469
length 414
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1516999
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11597292 ~ 11597705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactatctgcattgaccattTTTGCACTAACCTCTGTTGActcacatacgctgctgttacAGTTCATTAtcatcctgttgtctagtcactttctCTACcgatatgtacatatctacctcaattacctcgtactcctgcacattgactccctactggtaccccgtgtatataaccaagttatcattgactccctactggtaccccgtgtatataaccaagttatcattgactcagtactggtaccccgtgtatataaccaagttatcattgactccctactggtaccccgtgtatataaccaagttatcattgactcagtactggtaccccgtgtatataaccaagttatcattgactccctactggtaccccgtgtatataaccaagttatcattgactccctactggtaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736468 lncRNA upstream 2281 11594662 ~ 11595011 (+) True G1516998
TU1736445 lncRNA upstream 48623 11548398 ~ 11548669 (+) True G1516975
TU1736424 lncRNA upstream 81350 11513837 ~ 11515942 (+) False G1516961
TU1736429 lncRNA upstream 82121 11513837 ~ 11515171 (+) True G1516961
TU1736423 lncRNA upstream 83786 11513089 ~ 11513506 (+) True G1516960
TU1736472 lncRNA downstream 10543 11608248 ~ 11608843 (+) True G1517002
TU1736480 lncRNA downstream 26891 11624596 ~ 11625278 (+) True G1517010
TU1736484 lncRNA downstream 34832 11632537 ~ 11652279 (+) True G1517014
TU1736517 lncRNA downstream 107847 11705552 ~ 11764757 (+) True G1517042
TU1736553 lncRNA downstream 159551 11757256 ~ 11757966 (+) True G1517073
XM_036951829.1 mRNA upstream 140413 11453014 ~ 11456879 (+) True LOC110528750
XM_036951823.1 mRNA upstream 176389 11362611 ~ 11420903 (+) False LOC110495609
XM_036951409.1 mRNA downstream 152024 11749729 ~ 11759288 (+) True LOC110495615
XM_021570956.2 mRNA downstream 168658 11766363 ~ 11772739 (+) False LOC110495622
XM_036951844.1 mRNA downstream 168659 11766364 ~ 11772739 (+) False LOC110495622
XM_036951843.1 mRNA downstream 168661 11766366 ~ 11772739 (+) True LOC110495622
XM_036951842.1 mRNA downstream 175409 11773114 ~ 11779870 (+) True LOC110495619
TU1735957 other upstream 504738 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 580203 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1270154 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 1425336 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 1621986 9974528 ~ 9975306 (+) True G1515776
TU1736485 other downstream 35362 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 45084 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 342357 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1235946 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1336949 12934654 ~ 12936278 (+) True G1517456

Expression Profile