RNA id: TU1736485


Basic Information

Item Value
RNA id TU1736485
length 773
RNA type TUCP
GC content 0.51
exon number 2
gene id G1517015
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11633067 ~ 11634979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatggagagggaggaagagatatgcaggagagagatggagagggaggaagagatatgcaggagagacagatggagagaggaagagatatgcaggagggagatggagagggaggaagagatatgcaggagagagatggagggaggaagagatatgcaggagggagaaggagagggaggaagagatatgcaggagggagatggagggaggaagagatatgcaggagagacagatggagagggaggaagagatatgcaggagagacagatggagagagaggaagagatatgcaggagagacagatggagagagaggaagagatatgcaggagagacagatggagagggaggaagagatatgcaggagagacagatggagagggaggaagagatatgcaggagagacagatggagagggaggaagagatatgcaggagagacagatggagagaggaagagatatgcaggagagacagatggagagaggaagagatatgcaggagagacagatggagagggaggaagagatatgcaggagagagatggagagggaggaagagatatgcaggagggagatggagagggaggaagagatatgcaggagagacagatggagagagaggaagagatatgcaggagagacagatggagagagaggaagagatatgcaggagagacagatggagagagaggaagagatatgcaggagagacagatggagagggaggaagagatatgcaggagagacagatggagagggaggaagagatatgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736480 lncRNA upstream 7789 11624596 ~ 11625278 (+) True G1517010
TU1736472 lncRNA upstream 24224 11608248 ~ 11608843 (+) True G1517002
TU1736469 lncRNA upstream 35362 11597292 ~ 11597705 (+) True G1516999
TU1736468 lncRNA upstream 38056 11594662 ~ 11595011 (+) True G1516998
TU1736445 lncRNA upstream 84398 11548398 ~ 11548669 (+) True G1516975
TU1736517 lncRNA downstream 70573 11705552 ~ 11764757 (+) True G1517042
TU1736553 lncRNA downstream 122277 11757256 ~ 11757966 (+) True G1517073
TU1736545 lncRNA downstream 182376 11817355 ~ 11820418 (+) True G1517065
TU1736577 lncRNA downstream 202365 11837344 ~ 11837614 (+) True G1517095
TU1736540 lncRNA downstream 203548 11838527 ~ 11841346 (+) True G1517060
XM_036951829.1 mRNA upstream 176188 11453014 ~ 11456879 (+) True LOC110528750
XM_036951823.1 mRNA upstream 212164 11362611 ~ 11420903 (+) False LOC110495609
XM_036951824.1 mRNA upstream 212164 11362611 ~ 11420903 (+) False LOC110495609
XM_036951826.1 mRNA upstream 212164 11362611 ~ 11420903 (+) False LOC110495609
XM_036951825.1 mRNA upstream 212164 11365659 ~ 11420903 (+) True LOC110495609
XM_036951409.1 mRNA downstream 114750 11749729 ~ 11759288 (+) True LOC110495615
XM_021570956.2 mRNA downstream 131384 11766363 ~ 11772739 (+) False LOC110495622
XM_036951844.1 mRNA downstream 131385 11766364 ~ 11772739 (+) False LOC110495622
XM_036951843.1 mRNA downstream 131387 11766366 ~ 11772739 (+) True LOC110495622
XM_036951842.1 mRNA downstream 138135 11773114 ~ 11779870 (+) True LOC110495619
TU1735957 other upstream 540513 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 615978 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1305929 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 1461111 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 1657761 9974528 ~ 9975306 (+) True G1515776
TU1736489 other downstream 7810 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 305083 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1198672 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1299675 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 1302544 12937523 ~ 12942494 (+) True G1517457

Expression Profile