RNA id: TU1736540


Basic Information

Item Value
RNA id TU1736540
length 2792
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1517060
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11838527 ~ 11841346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttcaatgtttttatttagaattctaAGGATTCTGGAGATagcttattttttttatataagagCAAGAAACATGACAATCACAGTTTTAACAATCTGGACGATATATTGACGAGGAGTTTCTTTGGCACCAGTGGATTAAGAGAAGACGACATAGACTACTTCACTAACACTTTACTTGAAGCCGACAGATATACAATAATGCGATATTACCTGTTGTACATTATGTATGAACcaggggaggctgctgaggggaggacgactcattGTAAAGGCTGGAACGGAGTGAACGGAATGGCATTGATGGATTTGATACTAATCcacttattctgctccagccattaccaggagGCCGTCCTCCCCAATGGAGGTGCCACGACCCTGTGGTATGAAGCCTTATAATGTTTTATTATCAACTGTTGCCATGCTATATCTCTCTATGTTTTCTATACATTCACTGAGAGATGATACAGTACTAAGATATTCGAGGATCATAAATGATGATAGCTACAGATTGTACACCAGATAATGTGATATAACCAAAGAGTTTTGGTATCCATTACTGGGAGTTACAGATTTGCCGATACAAAACGCTGCTATAGATTCTTCAATTAACCTGGTATTGGCGATACGCTCTTTGTTCTCAATTCTGGAAAGCAGTTATCTTATAAATGTCCATGTCCAGGGGCAGGTGGTTCTATAAACAGCAGAGAAACCTCAGAAAGATAGTAAATCAAGTGTTTTGTATCAATGTGTGTAGAGCTTTGTTTTAACGTGACACACTGTCTGGCCGTGGCCGCTTCGCATAGAAATGACTAGTTCTGTCGAAGATGCTGGGAAATTCTAGATGTAGCTAAGATGGCGAGGATCCTCCTTGCGTGGTACGAAACATGGATTTACTATCTGAGTTTTCAGTGTTTTTTATAGAACCACCTGCCATTGGATAGAAGCATTTCTAAAATAACTGTTTCCCAGAATCAAGATGGAAGACAGTATCGCCAATCTTTGGTTTGATCACGTTATCTGTAACTAGTATTGTGACAAGTATTGTACTGATTGGCTTGAATTGTATCTATTAGGTCAAACAAAGTTATCATCTTACATACAAAGTTATCATCTTACATACACAaatataggtttaggtttagacTTTAAGCAGTAGCATAAGAAGATAATTATACCTTTTTAACAACTTCATCATcctttttcacatgtgaaacagaCATctgcccctgacacacacacgcacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacatgcaagcacataGATTGCACACAATGACATACAGgaagacacacagacatgaactgtaattgtgtgtgtgtgggtgtgtgtttttgAACAGAGGGTCTGTCTGAGTTTTTTAGAGGATGATGGGCAGAGTGTGGGAGTGGGAATGGGGAAGTATTTTAGGGAATAGGTATAGGTgtatttattttgtgtgtgtgtgttttaggggaCTTTGACAGCTGGGCCTCCTCTTCCACAagtctcccctccttctcctactcctcttccttctcctccacctctttctacactttcttctctccttccttctgctttttctctccttccttctcctactctttctctccttccttctactctttctccctctgcactttctcctccctgtcttcctcaTCGAAGGGCGAGATAGAGTGGAAGGCATCATGCGGGAGCGTGGCAGAGAGAGTGtactcctccctcactccctccgtCATAACCGACAGATCCACATCCGCCTCAGGAACGTCGGATTCTAGGAACGGTTTGGAATCAGAAAAAACGTTGGATTCTGGAATTTCGTCAGATTCTGGAACTTCACTGACAGCCACCTCTTCCATCTCCAAAGCCTCAGCCTTGGACTCCTCCAGCCCTGGAGCCAGTTGGGAGTGCACCTCGGTGAAGAGGACCTCCTCATCAGGGCTGGCCAGCGGGGAGATCTCAATGGAGGCCACGGCAGTAGGCGAGACCCCGGTCTGGGATGAGGCCTCCACCTCTGCTTCAGCTTCAGGTTGGCCCTCAGACTTACGATTCTGTTACAGCAGGATGTAGTCATGTCAGATGAATCCACaacagtgtgagtgtttgtgtgtgtgtgtgtgtgtgtgtactgaccttCTTGATGCTGAACGTGAGAGGGGACACTTTGAAGGAGGAACTCTTTGGGTGGTTGGGTGTCAGGCTCTTCTTCATCTTCTCTCGTTTCTCCTGTGACACAATCTTGTTCATCTTCTTCTCTATATTCGCTTTGGAGAAGGCCCTCTTCAGACTGTCCACCTGCAATACATTGTGCAATACCATGCAGTCAGTACATAGCAGGAAatctcctaacccttacccctaacctccGACCCCTGATCTTAAGCTCTGCAATACATCAATAGTCAGCATTGAAAATGCCACACGGCCACAGAACATGACCTTGACCCCTAACCTCTCACCCATAGACTTTGACCCCTAATGCCGGTTTTCTACATCACTCACCTTCTTTAGACTAGAGCGTTTAAACTTATCCGTGCGGGATTTGTCTGTGTGCTCTCCGGCCAGCTCGTATACGTCATCTCCCACCTCGTCCAGGTCCGCCTCCAGCCCTACGTCCTCGTCCGAGGATAGGTCAATGGTGTGAAGCCCCTCCTCCGTGGAGCGGTTGGCGTCGATGACGGCGGTgggctcctccccctcctcagctTCACGGGGGAAAGGAACAGTATCCTTGACAAACACACTGGTTGGGATTTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736577 lncRNA upstream 913 11837344 ~ 11837614 (+) True G1517095
TU1736545 lncRNA upstream 18109 11817355 ~ 11820418 (+) True G1517065
TU1736517 lncRNA upstream 73770 11705552 ~ 11764757 (+) True G1517042
TU1736553 lncRNA upstream 80561 11757256 ~ 11757966 (+) True G1517073
TU1736484 lncRNA upstream 186248 11632537 ~ 11652279 (+) True G1517014
TU1736583 lncRNA downstream 20026 11861372 ~ 11862045 (+) True G1517101
TU1736636 lncRNA downstream 98716 11940062 ~ 11941105 (+) False G1517150
TU1736638 lncRNA downstream 98716 11940062 ~ 11941897 (+) False G1517150
TU1736640 lncRNA downstream 98716 11940062 ~ 11941897 (+) False G1517150
TU1736641 lncRNA downstream 98716 11940062 ~ 11941897 (+) False G1517150
XM_036951851.1 mRNA upstream 24295 11809043 ~ 11814232 (+) True LOC118941095
trnas-cga-32 mRNA upstream 29537 11808909 ~ 11808990 (+) True trnas-cga-32
XM_036951852.1 mRNA upstream 30147 11803177 ~ 11808380 (+) True LOC110495630
XM_036951383.1 mRNA upstream 35789 11791601 ~ 11802738 (+) True LOC118941042
XM_036951842.1 mRNA upstream 58657 11773114 ~ 11779870 (+) True LOC110495619
XM_036951855.1 mRNA downstream 44527 11885873 ~ 11926209 (+) False LOC110497058
XM_036951856.1 mRNA downstream 44527 11885873 ~ 11926209 (+) True LOC110497058
XM_036951864.1 mRNA downstream 166608 12007954 ~ 12021342 (+) True LOC110527250
XM_021608408.2 mRNA downstream 197396 12038742 ~ 12045602 (+) True zswim2
XM_036951873.1 mRNA downstream 207633 12048979 ~ 12060014 (+) True dytn
TU1736489 other upstream 194769 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 203548 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 745973 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 821438 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1511389 10319310 ~ 10327138 (+) True G1516136
TU1736637 other downstream 98716 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 992305 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1093308 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 1096177 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1345755 13187101 ~ 13188080 (+) True G1517545

Expression Profile