RNA id: TU1736672


Basic Information

Item Value
RNA id TU1736672
length 360
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1517174
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11993702 ~ 11994943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCCCCTTAGTAGGCATATGTATCCCCTTAGTATATCCCCTTAGTAGGCCTACGTATCCCATTAGTATATCCCCTTAGTAGGCCTATGTATCCCCTTAGTATACACCCTTAGTAGGCCTATGTATCCCCTTAGTATATCCCCTTAGTAGACATATGTATCCCCCTAGTAAATCCCCTTAGTAGGCCTATGTATCCCCTTAGTACATCCCCTTAGTAGGCCTATGTATCCTCTTAGTAGGCCTATGTATCCCCTTAGTATATCCCCTTAGTAGGCCTATGTATTCTCTTAGTAGGCCTATGTATCCCCTTAGTATATCCCCTTAGTAGGCCTATGTATTCTCTTATTAGGCCTATGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736638 lncRNA upstream 51805 11940062 ~ 11941897 (+) False G1517150
TU1736640 lncRNA upstream 51805 11940062 ~ 11941897 (+) False G1517150
TU1736641 lncRNA upstream 51805 11940062 ~ 11941897 (+) False G1517150
TU1736642 lncRNA upstream 51805 11940062 ~ 11941897 (+) True G1517150
TU1736636 lncRNA upstream 52597 11940062 ~ 11941105 (+) False G1517150
TU1736679 lncRNA downstream 1358 11996301 ~ 11997659 (+) False G1517176
TU1736680 lncRNA downstream 1358 11996301 ~ 11997659 (+) False G1517176
TU1736688 lncRNA downstream 1358 11996301 ~ 11997659 (+) False G1517176
TU1736696 lncRNA downstream 1358 11996301 ~ 11997659 (+) False G1517176
TU1736698 lncRNA downstream 1358 11996301 ~ 11997659 (+) True G1517176
XM_036951855.1 mRNA upstream 67493 11885873 ~ 11926209 (+) False LOC110497058
XM_036951856.1 mRNA upstream 67493 11885873 ~ 11926209 (+) True LOC110497058
XM_036951851.1 mRNA upstream 179470 11809043 ~ 11814232 (+) True LOC118941095
trnas-cga-32 mRNA upstream 184712 11808909 ~ 11808990 (+) True trnas-cga-32
XM_036951852.1 mRNA upstream 185322 11803177 ~ 11808380 (+) True LOC110495630
XM_036951864.1 mRNA downstream 13011 12007954 ~ 12021342 (+) True LOC110527250
XM_021608408.2 mRNA downstream 43799 12038742 ~ 12045602 (+) True zswim2
XM_036951873.1 mRNA downstream 54036 12048979 ~ 12060014 (+) True dytn
XM_036951870.1 mRNA downstream 74106 12069049 ~ 12080939 (+) False LOC110538823
XM_036951872.1 mRNA downstream 74107 12069050 ~ 12080939 (+) False LOC110538823
TU1736637 other upstream 52597 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 349944 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 358723 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 901148 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 976613 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 838708 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 939711 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 942580 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1192158 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2439819 14434762 ~ 14436120 (+) True G1519096

Expression Profile